Array 1 942295-943909 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025555.1 Salmonella enterica subsp. enterica serovar Typhimurium strain PIR00538 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 942295 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 942356 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 942417 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 942478 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 942539 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 942600 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 942661 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 942722 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 942783 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 942844 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 942905 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 942966 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 943027 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 943088 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 943149 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 943210 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 943271 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 943332 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 943394 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 943455 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 943516 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 943577 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 943638 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 943699 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 943760 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 943821 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 943882 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 960042-961518 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025555.1 Salmonella enterica subsp. enterica serovar Typhimurium strain PIR00538 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 960042 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 960103 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 960165 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 960226 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 960287 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 960348 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 960409 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 960470 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 960531 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 960592 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 960653 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 960714 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 960775 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 960837 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 960940 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 961001 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 961062 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 961123 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 961184 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 961245 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 961306 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 961367 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 961428 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 961489 29 96.6 0 A............................ | A [961515] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //