Array 1 1434-4103 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLOW01000060.1 Pseudomonas aeruginosa strain WH-SGI-V-07409 WH-SGI-V-07409_contig22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1434 28 100.0 33 ............................ TGGGGACCGCCCAGCCGAAGCCGGCTGCTCCGG 1495 28 100.0 32 ............................ GAGGGCGATCTCGACTTCTCGTCGATGATCAG 1555 28 100.0 32 ............................ TGTCCGCAGCAGGCCCTAGGGGATAACTGCGG 1615 28 100.0 33 ............................ ATCTTGATCTCCAGGTAGAAAGGGAAGGCGCTT 1676 28 100.0 32 ............................ TCGATGCCCCTCTTGCGAAGGGCATCTGAGAA 1736 28 100.0 32 ............................ GCAAGGCATGCAGCCGGGCACGAAGCTCTACG 1796 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 1856 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 1916 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 1976 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 2036 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 2096 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 2156 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 2216 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 2276 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 2336 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 2396 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 2456 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 2516 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 2576 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 2636 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 2696 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 2756 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 2816 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 2876 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 2936 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 2996 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 3056 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 3116 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 3176 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 3236 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 3296 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 3356 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 3416 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 3476 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 3536 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 3596 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 3656 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 3716 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 3776 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 3836 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 3896 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 3956 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 4016 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 4076 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================= ================== 45 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 14336-12628 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLOW01000060.1 Pseudomonas aeruginosa strain WH-SGI-V-07409 WH-SGI-V-07409_contig22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 14335 28 100.0 32 ............................ TCCAGTTGCGGGGCTCGGTAGAGCTTGTCCTG 14275 28 100.0 32 ............................ GAGTAGTCGCCGGTGTTCGACGCTGCCGAGTA 14215 28 100.0 32 ............................ TCACCATCATGCTTGTACGTGCCGCCGATCTC 14155 28 100.0 32 ............................ GGCTACCAATCGGCAGCGTCGAACACCGGCGA 14095 28 100.0 32 ............................ CTCTTCGCGGATCTTGGCCAGGAACGGGTCAA 14035 28 100.0 32 ............................ AAAACGCAGAGACCCGATGGCGTAATCTTCCG 13975 28 100.0 32 ............................ TGGCTGGAGCGGAGCGTCGGCGATAGCGCGCA 13915 28 100.0 32 ............................ AGTCTGCGCCAATGGAGAGGCCTTCCAGCCAT 13855 28 100.0 32 ............................ AGCACGCTGTGCTGAGCCACGACCTTTTCGTC 13795 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 13735 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 13675 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 13615 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 13555 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 13495 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 13435 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 13375 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 13315 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 13255 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 13195 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 13135 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 13075 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 13015 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 12955 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 12895 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 12835 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 12775 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 12715 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 12655 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 29 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //