Array 1 1644916-1643626 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP021769.1 Streptococcus agalactiae strain B509 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   1644915	    36	 100.0	    30	....................................	ATTTGAATATAAATTTAAAGCGCCAGCAAC	
   1644849	    36	 100.0	    30	....................................	AACTACATCTATATGTGTTTCGTTAATTGT	
   1644783	    36	 100.0	    30	....................................	GTTTTTCTTTCAAAACTTTTTGATTTCCCT	
   1644717	    36	 100.0	    30	....................................	TCTTAATAAGTTTGGTATCTCAAATACTTT	
   1644651	    36	 100.0	    30	....................................	AAAAAGTGACTAATCTTTATTTTTTATTTT	
   1644585	    36	 100.0	    30	....................................	AACTGTTAGATAGCCCGGTCCAGCACCACT	
   1644519	    36	 100.0	    30	....................................	TCTATTTTATGACTTTTACCATTTACCCAT	
   1644453	    36	 100.0	    30	....................................	AAAACAATTGAAGAGCTGGAGAATTACACT	
   1644387	    36	 100.0	    30	....................................	TTGGAAAAAACACGAAAGTGATATTACTTT	
   1644321	    36	 100.0	    30	....................................	TAAGAATTTTAGATACTCTACTTGAATGCT	
   1644255	    36	 100.0	    30	....................................	AAGACTTAAAATCGATTAGAATTGATTTTA	
   1644189	    36	 100.0	    30	....................................	AAGACTTAAAATCGATTAGAATTGATTTTA	
   1644123	    36	 100.0	    30	....................................	CCAGTTTAGAAACAGAACAAAACTAACGAA	
   1644057	    36	 100.0	    30	....................................	AGACAAAGAAGATGGCAAGTCTATCAACAA	
   1643991	    36	 100.0	    30	....................................	AGTAGAAACATAACGATAATTCCATGAATA	
   1643925	    36	 100.0	    30	....................................	GCTTGGTCTCGAAGAATTACAGAAGAACAT	
   1643859	    36	 100.0	    30	....................................	TTCTATCTTCTGAAGATATTTCACAAGTGA	
   1643793	    36	 100.0	    30	....................................	TCAGCGAGATGCTCTAAGTAAGCATGTTGA	
   1643727	    36	 100.0	    30	....................................	TCTTCTTTTTAATTCTTCTAACACTCCATC	
   1643661	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        20	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  ATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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