Array 1 1-151 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFPN010000179.1 Clostridium botulinum strain CCUG 7968 CCUG_7968_contig_0000179, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================== ================== 1 23 100.0 40 ....................... TAAACAAAATTCCCAATGGCTTTTATATAGGTTGAACATT 64 23 95.7 42 ....................C.. ATTTAATTATATGTATTAGAAAGCCAGTAACCGTTGAACATT 129 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ========================================== ================== 3 23 98.6 42 AACATGAGATGTATTTAAATGTA # Left flank : | # Right flank : ATTTAATACATTTTCTAAAGTATTAGCCATATGTTGAATAATAAGAATCATTAAAAGTCCTAGAAAAATCTAAGGCTTTTATTTTATGCAAAGATTTAGAATAGAATATGATAGGTAAGTAACTTATCATTAATAAAGATAATAATATTTTTAAAATAAAAGTAGAATAATCGGTTATATTAACTAAAGGCTATATGGTATAATATAGATAAATTTGTATAAAGAGGTGCATAAATGGAATTTTGTGAACTGATTGCAACAGTGATGTTAAAAAAAGATATATATTTTGAAGATTGTGGATATATAATAGGGAAAAACATAAATAAAAGTATGCTTTTGGATAAAGATTTAAAGGAAATACATCCAAAGAAACAGTACAAAAATTACGTATTTAATAGTTTTTATCCTATAGAAAGAGACAAATTTTATAAAAAGGATAGATTATATATTTTTAATATTAGGGGATTGAGTAAAGAATTTATAGATAAAATAGAAACTTG # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACATGAGATGTATTTAAATGTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.26%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 55-285 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFPN010000131.1 Clostridium botulinum strain CCUG 7968 CCUG_7968_contig_0000131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 55 31 93.5 37 .................A............T TAATATATTTACCAAGGTTTTATATTATCATACTTAA 123 31 100.0 35 ............................... CTACTGCAGTAACGGAATGTGGTGGCAAACCTAAT 189 31 100.0 35 ............................... AGGGTTCTCCACACTCTAGTTCTTTCATAAGTTCA 255 31 90.3 0 .......................C....GC. | ========== ====== ====== ====== =============================== ===================================== ================== 4 31 96.0 36 GTTGAACATTAACATGAGATGTATTTAAATA # Left flank : ACATGAGATGTATTTAAATTCTAAATCTTTTGCACTTGCTAATTTACCTTTTTCG # Right flank : AAGAAATGCAATCATCTGATTTAGAATAATCATTTATACATGGCAATAATTTTTTGCTTTATTACTTCTTGAGTTAAATTGTGGGATTTTATTGACTAAAATATTTTTAAAATATAGTTTTAATTTTGGTTGTGCTTTAAAGTAGTGTTGGAATTTTAAACCCCATTAAAAGAAGTTAAATATTTTCTTTTAATGGGGTTTATATAAATTGTAAGATACTAATTATTTAAAAATTTATTTAATGAATCATTATCTTTAAATAAGTCTTTTAAGTTACCGTATTTTTGTCCTAAATTTTTTCTATCATATTTATAGGATTCTTCTCCTATATTCTCTACATTAAATTTAATAATTTCAGCATTTGGTATAAGAGACAATAATATCACTGCATTCTTTTCTAAGAGTTCTTCAACTTTTTTGTCCTTCCAAAATTTATTATAATTTTCTTCCCCTAAATTTTTATTTGTTTTATAGTTAACGGTTATTTCATAGGGCTCTTT # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 8301-8810 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFPN010000043.1 Clostridium botulinum strain CCUG 7968 CCUG_7968_contig_0000043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================================================================================== ================== 8301 30 100.0 35 .............................. AAGGCAGTTATACAGGTTAATAGATTGGTTTTATC 8366 30 100.0 38 .............................. ATTTGTCCAAATAACAATATTTATCACCCCCTATTCGT 8434 30 96.7 36 ................A............. TTTCTATTTTCTTTAAAAAATTGCCTATCTACATTT 8500 30 93.3 37 ............T....A............ ATAGATAAACAACTCTGAAGATATGCTTTGCTTACCA 8567 30 76.7 118 .......CT......GAT..........GC AGAGAACCCAAATCTGTGATTTGGTGTGAATCGCTTACTCCTTCGAGAAGAGGAGAAGGAGTTTCATTAAATAATAATTAGACACTTAGTATTTTAAGCTTAAGTATGATCTGAAAAG 8715 30 90.0 36 ........T......GA............. TATTTACATTCTGTTATACCACAACATTTACAACAT 8781 30 86.7 0 ........A.......A...........GC | ========== ====== ====== ====== ============================== ====================================================================================================================== ================== 7 30 91.9 50 GTTGAACAGTAACATAGGATGTATTTAAAT # Left flank : TAAGGATTAGAATAGGTTTTTATTATGTATTTTTTAAAAAGCAGAATCACTTGGAAAAATTTCTTTAAAACCTTGTAAAATCAATGGGTATATGATATTCTTAGAAATAAGGAATGCCTATTTTACTATGATTGAACAATAACATAGGATGTATTTAAATTCTTTATATAGATGCATATCTTCTAATACTCCACCTGTTGAACATTAACATGAGATGTATTTAAGCAGGGAATCCAAATTCCTGATTTGGTATGAGTCGCTTACTCCTTCGAAAAATAGAAGAAGTAGTTTTATTAATGAACATAGTGTATATATAATTAAATTTTTCCAAGTGAATTTAATCTTCAAACCTATCCTACCCATTGAAATATAAGGATTAGGATAGGTTTTTATTGTGTATTTATGAAAAAACAAAATCACTTGGAAAAATTTCTACAAAACCTTGTAAAATCAATGGATATATGATATTCTTGTAAATAAAGAATGGCTATTTTACTATG # Right flank : AGAGAACTCAACTTTACGATTTGGAGTAAGTTGTTTATTTCCTGTAGAGGAGAAGTATGAGACTCATTAATGAGCATAGTATATATATCATATCTAATTAAATTTTTCCAAGTGAATTTAAATTTAAAACCTATTCTAGCCATCGATATGTAAGGATTAGGGTAGATTTTTATTATGTATTTATGAAAAATAAGAATCGGTTGGGAAAATTTCTTTAAAACCTTGTAAAATCAATGTGTATATGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATGGTTGAACATTAACATGAGATGTATTTAAATATGTTATCTCATTTATTGATGCGGATTTGATGAAATGTTGAACAGTAACATAAGATGTATTTAAATTGAACTTAATAATATATAATGTAATTAAAAGGTTAAGAGTTGAACATTAACATGAGATGTATTTAAATTCTTTAGCGTCTTGATCTATACCTATATATTTAAGGTTGAACATTAA # Questionable array : NO Score: 4.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-1.39, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 9091-9254 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFPN010000043.1 Clostridium botulinum strain CCUG 7968 CCUG_7968_contig_0000043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 9091 30 100.0 36 .............................. ATGTTATCTCATTTATTGATGCGGATTTGATGAAAT 9157 30 93.3 38 ........G......A.............. TGAACTTAATAATATATAATGTAATTAAAAGGTTAAGA 9225 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 97.8 38 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : TTAAGCAGAGAACCCAAATCTGTGATTTGGTGTGAATCGCTTACTCCTTCGAGAAGAGGAGAAGGAGTTTCATTAAATAATAATTAGACACTTAGTATTTTAAGCTTAAGTATGATCTGAAAAGGTTGAACATTAACATGAGATGTATTTAAATTATTTACATTCTGTTATACCACAACATTTACAACATGTTGAACAATAACATAAGATGTATTTAAGCAGAGAACTCAACTTTACGATTTGGAGTAAGTTGTTTATTTCCTGTAGAGGAGAAGTATGAGACTCATTAATGAGCATAGTATATATATCATATCTAATTAAATTTTTCCAAGTGAATTTAAATTTAAAACCTATTCTAGCCATCGATATGTAAGGATTAGGGTAGATTTTTATTATGTATTTATGAAAAATAAGAATCGGTTGGGAAAATTTCTTTAAAACCTTGTAAAATCAATGTGTATATGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : TCTTTAGCGTCTTGATCTATACCTATATATTTAAGGTTGAACATTAA # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 27072-27299 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFPN010000045.1 Clostridium botulinum strain CCUG 7968 CCUG_7968_contig_0000045, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 27072 29 100.0 37 ............................. CATATTTTGTTCTACTTCTGAAACTGTTATAGGGTCG 27138 29 100.0 38 ............................. CTTGTTATGTTTTCCTTTTTCATATAAAATCACCTCTA 27205 29 100.0 37 ............................. TTCTTCCAAGAATTTATATTCATCTGAATACTCTATT 27271 29 89.7 0 ...............T.A.......G... | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 97.4 38 ATTGAACATTAACATGAGATGTATTTAAA # Left flank : AATCGGATTTGCATTTAAAGAAGTAAAAGCTGGAGAAGAAAAAAGATTTGAGATAGTAATAACCTATAATAAAAAAATGTATATTTTAGAACTTAAAATATGGAGAGGTGAAGAGTATCATAAAAAAGGCTTAATACAGCTAGCAGAATATTTAGAGCAATATAAATTAGATAAAGGGTACCTTTTAATATTTGATCTAAGAAAATCCACAAATTTAATAGGAGAAGTAGAAGAAAACTATATAGGTATAGAAAATCATAGTAAAAAAATAATACAGGTTTATTGTTAAAAAGTATATAGCAGTTAAAAATTATTTCTAAATATTTTTCCAAGTGAATTAAAAATCTAAACCTATCCTAGCCATTGGAATATAAGGCTTAGGATAGGTTTTTATTATGAAATTTTAAAAAACAAAATCGATTGGAAAACGTTCTATAAAACCTTGTAAAATCAGTGCTTATATGATATTCTTGAAATTAAGGAATGGCTATTTTACTGTG # Right flank : AAAAACAAATAACGATGAAAGGATAACAAATAATAATTAAGGTAGCTTTTCATTGACAAGGTTTTTCAGCATTTTGAAATTGAAAAATCAATAGCAAATATTATACAGAGAGGGAATCAATTGTAAGCAGTAAAATCTAATTTTATAGTTAGTTTTTTATAGAATTAGATAGTTAAAAAATTAAACATATAAATATGTGTTTATTTTTTATATAAATTTGATATAATATAAATAAGAAAAGCTTAGTGTTGGAGCACTAAGCAATCCTTAGAATATTTATTTTGTTTTAGGGCTATTGGATGAATTTAATAATTAAATTTGAGAGATTGAAGCACTATTCTTGGTCGGATGGGTGCTTTTTCTCTTTGCCATTAAGTTCTATGTGAATACCAAGAAATTTAATCTTGATAACTAGTTTGGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATGGTTAATTCTAGCATATCC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATGAGATGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //