Array 1 52149-54882 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNGM01000035.1 Vibrio parahaemolyticus strain F10_1 F10_1_contig035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 52149 28 100.0 32 ............................ TTTCATTGTTCTTTACTTCTGGTGCGGAGTAG 52209 28 100.0 32 ............................ AAACACATGTTCCCGTAATCTTCGTTGTGGAT 52269 28 100.0 32 ............................ AAACACATGTTCCCGTAATCTTCGTTGTGGAT 52329 28 100.0 32 ............................ ACCAATCTTACCACACGAGAAAACGTAGTGAC 52389 28 100.0 32 ............................ TCAAGGGAACTTGGCAGCAATGGCTACTGTTA 52449 28 100.0 32 ............................ GCGATAAACACGAACGGATACATGTCAGCCGC 52509 28 100.0 32 ............................ GCGATAAACACGAACGGATACATGTCAGCCGC 52569 28 100.0 32 ............................ AACAGAGGCTTTCCAGATCGGATTCAATCCTG 52629 28 100.0 32 ............................ ATTCAATGAATCAAAGATGATTGATGGTGAGT 52689 28 100.0 32 ............................ ATTCAATGAATCAAAGATGATTGATGGTGAGT 52749 28 100.0 33 ............................ TGTCACGGCCACGATAGCGTCCCTGGTTAACTT 52810 28 100.0 33 ............................ CACCGCTTGTGCCATCTCCTGACGCGTCCGTTT 52871 28 100.0 32 ............................ ATAATGCCAGAGGTGACGCCTCCAGCGATTGC 52931 28 100.0 32 ............................ ATATAGATGACTCTCCATTTCAAACAGAATTC 52991 28 100.0 32 ............................ ATTAGCTCGATGCATGAAAACGACACGTTTTC 53051 28 100.0 32 ............................ AAATACGCTCGCGCATGAGGAAATCCATATCC 53111 28 100.0 32 ............................ TTACAAAAAGCCCAATTGGGCGGTGTTCCTCT 53171 28 100.0 33 ............................ TTTAAAGGTTAGGTCCTCGCCGATACCGATCCA 53232 28 100.0 32 ............................ TGGCAAAAAAGCGGCAGCTTAAAAATGAGGGC 53292 28 100.0 32 ............................ GTCTCGGATTTTATAAAAAGTTGACCTCGATA 53352 28 100.0 32 ............................ CGCACAGAAAAATAGGCTCAAAATGGGTGAAG 53412 28 100.0 32 ............................ CGCACAGAAAAATAGGCTCAAAATGGGTGAAG 53472 28 100.0 32 ............................ ACCACAAACAGGTACACACTTTAATGTAGTAA 53532 28 100.0 32 ............................ ACCACAAACAGGTACACACTTTAATGTAGTAA 53592 28 100.0 32 ............................ AATTCACCGGACGGCCAAAAAATGATAATGGA 53652 28 100.0 32 ............................ AATAGCGACAAACGAAAAGGTCAATGAATCGG 53712 28 100.0 32 ............................ GTCGCTCTTGGCTGGTACCCGTCCCAAGGTCT 53772 28 100.0 32 ............................ ACTCAATGATGATTTTGTCGGCATACTTCGAA 53832 28 100.0 32 ............................ AGCGTAGCCAATACCACCCGTAAAGCCAAGAT 53892 28 100.0 32 ............................ AAACGAAACAGGCCCAATGCCTGAACGTTTGA 53952 28 100.0 32 ............................ ACCATCAAAAAAACCAGCAATGTCGGCATTGT 54012 28 100.0 32 ............................ AAACGAAACAGGCCCAATGCCTGAACGTTTGA 54072 28 100.0 32 ............................ ACCATCAAAAAAACCAGCAATGTCGGCATTGT 54132 28 100.0 32 ............................ AAAATAGGAGCTGGCGCGGTTGCTGCCGGGAA 54192 28 100.0 32 ............................ TGCAAATTCATGCTCACGTACCGCGTTTGCCA 54252 28 100.0 32 ............................ AAACGTTGACTGTTGCGGCTACTGTCCAGGCA 54312 28 100.0 33 ............................ TTGTTAGCTGGCATCACTCGAGCGCCGTAAAGT 54373 28 100.0 32 ............................ ACACAAACTGCTTTTTATCCGTCACGTCTAAA 54433 28 100.0 32 ............................ TCAATATAACGAGTACCAGAACGAGCATCACG 54493 28 100.0 34 ............................ ATCATCGATTAGCGTTGAGCGCTATGTTGATTCA 54555 28 100.0 32 ............................ TGTCACAGCCACGAGCGCGTCCCTGGTTAACT 54615 28 96.4 32 .............C.............. TGCCCGTTGTTGTAGCGTTGACCATGCATCTA 54675 28 92.9 32 ..........A..C.............. TTTAATCGCTGAATCGGCGGGGTTAGTAATCT 54735 28 89.3 32 ...A......A..C.............. GCCACGCGATACAGTGAGAACAACGGCCAATC 54795 28 85.7 32 ...A......A..C..A........... AGGCTAAAACCAACCGCACAACGACGATAACC 54855 28 85.7 0 ...A......A..C............G. | ========== ====== ====== ====== ============================ ================================== ================== 46 28 98.9 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAACGATGTGACTTACGTTAGCTTTACTCGGAAACAAGTCAAATCCCCTGAGCGAATTGAACGCGATATGCAGAAAAAAGCGGAGCTTTGGGCGGCTAAATCTGGCAGGTCATTACAAGAGTGTCTTGTGGAGCTGGAAAAGACTAAGCCGACCTCGCTCTGTTCATTACCGTTTATCTATTTACATAGTCAACAAACCAAACAACGTTCACCGGATAAGAGCAGCAAATTTCCGTTGTTTATTGAAATGAAAGCTATCGGAGTAAAACAAGAAGGTTATTTCGACTGCTATGGGCTGAATTCCAAACTTAATCGGCAAGATTGCTTAGGGACTGTTCCGCAATTTTAATCAATAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAGGTATAAAATACAGCTAGTTACAATAGATAGATTTTGACAAGGTAAAAACATGATTTTTATCCTATCTATCTGTTGTAACTTTCTTTTATTGATTTATTCTGTT # Right flank : GGTTGAAACGGTGTCCTCAAGTGTAAGCTTTATTCATATCGAGAGCTTTACGCTAAGTCGTAAAATTTAGATTTTATTCTCATAATATTTAGCCAAATAATTTCCTACATTAAGTTTAATAATAACCTTACTTAAAGGTATTTTTTATTTTCCATGTGGGGTAATAAATTTTTTGAAGTGTTACGAAAATCCATAATTATTCATGTTTGATTTAATTTAATTTGCCAAAATTTAACAAAAAACAAAAGTCAAAAGATATGATTGCTTGGAAATAATCGGTGAATAATGCATAAATTAATATTATGTGTATTATTATTGAAATTAATGATTGAAGTGTATCGTCTCGCGATAAGGAATAAAATAGTGTTGTGTAATGTTTGTAAATTGAATTATGACAAAACTATAAGGCTAGGTAGGATAGCCATTTGTGATGAATGTTTGATTTCTGCAAGTGATTTTTATAAAGAGCATAGTCATGAAAAGTTTGAAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //