Array 1 210008-208758 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDRA01000003.1 Salmonella enterica subsp. enterica serovar Newport strain 92 NODE_3_length_433686_cov_15.2523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 210007 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 209946 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 209885 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 209824 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 209763 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 209702 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 209641 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 209580 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 209519 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 209458 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 209397 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 209336 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 209275 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 209214 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 209153 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 209092 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 209031 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 208970 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 208909 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 208848 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 208787 29 100.0 0 ............................. | A [208760] ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 228229-226677 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDRA01000003.1 Salmonella enterica subsp. enterica serovar Newport strain 92 NODE_3_length_433686_cov_15.2523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 228228 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 228167 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 228106 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 228045 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 227984 29 100.0 32 ............................. TCATGCTTTCGACTAAATACTACCGCGACAAC 227923 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 227862 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 227801 29 100.0 32 ............................. CAGGCTGGTGCCATAGTTTTGAGTTTCTACCG 227740 29 100.0 32 ............................. CGTTGTCGTTGCTGGACAGAACTCCGGGGACG 227679 29 100.0 32 ............................. TACGGGCATGGACGGCTCGTACAGTTTTGACG 227618 29 100.0 32 ............................. TGCTCCGCTTCTGGTAGTGCTTCCAGACCCTC 227557 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 227496 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 227435 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 227374 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 227313 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 227252 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 227191 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 227130 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 227069 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 227008 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 226947 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 226886 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 226825 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 226764 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 226704 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //