Array 1 470839-472398 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCUN01000011.1 Streptococcus oralis subsp. oralis strain RH_1735_08 s_oralis_RH_1735_08_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 470839 28 100.0 33 ............................ TACCACTGCTCTTGCGATATTCTTTGCCAATCT 470900 28 96.4 33 ............T............... CGTGACTTTCCGTTTGGTGACTGATTATAGCCT 470961 28 96.4 33 A........................... CGGTGCAGTCAGCATCCTTGTCATTTTGGCAGG 471022 28 85.7 33 T...........G.A........A.... TAACACGATTGACATTCCCATATTGAGTCAAAT 471083 28 96.4 33 ....................A....... CACAATTCACTTGTACGAACGGGGTGGATATCC 471144 28 92.9 33 ............G.A............. CAAGACTCTTACCATCTTCAAGATGTCTGATAT 471205 28 92.9 33 A....................A...... CAAGACCAGGATAAGCAAATCAAGGCACTTGAA 471266 28 92.9 33 ............T.............T. TACGATTGAAGATAATAAGAAAGAAACAAGTAA 471327 28 89.3 33 ............T.T...A......... TGGGTCTAAGAAAATGACCTTTTGAATGGTTGT 471388 28 85.7 33 ............G...T...AT...... CATTTGCTTCTGACCGTTGAAATAGAAACCGTG 471449 28 92.9 33 ............G.A............. TGGGTATAGTAAAGAGGGCTTTTTAATGCCTTT 471510 28 92.9 33 ..............T..T.......... TGAGGGCTTGGTCATCGGTAAGAATGACGGTAG 471571 28 100.0 33 ............................ CATGATTATGACTATCAATGACCATGAGGGTGA 471632 28 96.4 33 ............T............... TACGCAAGACGTTTCAAGTGCTGCAATCCTTAC 471693 28 100.0 33 ............................ TGATAGAAGCCGATTGGGTTTGACTGCTCCACT 471754 28 96.4 33 ............G............... TTAAGTTCACTTCTTAAAAAAGATGAAGAATTG 471815 28 100.0 33 ............................ TGAACAAGACAAGCAAATCAGCAGTCTAGCGAT 471876 28 96.4 33 ...................A........ TGAATGGTATTATCTCACGAATGAAAACGTTGA 471937 28 96.4 33 ............G............... CAGTATTTTTAGCAACTTTAGCTTATCAATGGA 471998 28 96.4 37 .....................A...... TATCCTGGATACAGGAATTGAACTGGCTTTCATGTTT 472063 28 92.9 33 A...........G............... TGTAGACACATCTACAAGCTGGACAATCCCTCT 472124 28 96.4 33 ............G............... TACAGATGCTTGTATTCGCTTTATGGAAGTTAT 472185 28 100.0 33 ............................ CTGATTATCTAGCCCCATCTCATAGATGGCCCA 472246 28 100.0 33 ............................ TCCACCAATTTTTCCTTTGTAGCCATCAAGCAA 472307 28 92.9 33 ............G........A...... TATCCACGTTTACTCTATCCTTAAACAAGTCAA 472368 28 92.9 0 .....................A....A. | G,T,C [472385,472391,472395] ========== ====== ====== ====== ============================ ===================================== ================== 26 28 95.1 33 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : TGCTGGTAGTGCTCAAACCAAGGATTATCAACAATTTTTAGATAACATCTATACTGGTAGCCGAATGAAATTTCGAGTGGTGCTTAATCCAGTTATTTCCTTAGTATCACCAGATAATCTTAAAAGAGGTATTGTAAAACCTCATATTACGAGTGAACATCAGATGAATTATCTAGTAGAACGCTCTGACAAAAATGGATTCTCACTGATAAAAGAAGATTTTTCAATCGTTGAACGTGGTTATGAGGTGTTTAAAAAAGCTGTTAAACCTATCCGATTGATAAAGGTTGTTTATGAAGGGGTCTTAACAGTTAGTGATGCAGATCTTTTTAAGAAGCTTTTGACTGAAGGAATGGGAAAGAAAAAAGCATACGGTTTTGGTTTAATGACCGTTATTCCATTGGGAAACGAATCATGGTAAAAAAAAGTGGAACGAAGAAAACATCTCTGCGAGAACTTCCTAAAATAAGTGATCGTGTCAGCTTTATTTACGTAGAACA # Right flank : CATAAAATGAGATATAAGAAAATCTCCCTATTGAAAACTGGTAAATTAGAGATAGGAGTGTTTTTTTATAGGAAAAAAGCATATTTTGTGTCAAAGAAGACATCTTACATAACAAAGGAGAAGACAAGTAAATCGAATGAAGTCATCATGGAGACATTTGGTAACAATAACATCAGTTGGGTAAAAAACTTGTAGCAGAGTATAAGAAAATTTGTCTTGCATCTGTTTTCTTAGAGATTTTCAGAACTAAATGCTCAACATTTTTTGATTGGAAAAACGAGACTAAAATCCTTAGCTCAGATTATCGTTTCTATCGGTCTAGCCCAAAACTTTGCGGCCCTCAAAGCCTTGGTGAGTACGGGCATCCAGCAAGGTCACATGAAGTTACAGGCCAAATCCTTAGCTCTCCTAGCAGGTGCTAGTGAGTCTGAAGTTGCTCCCCTCGTTGAGCACCTCATCGCAGATAAAACCTTTAACTTAGAGACAGCCCAGCGCTATCT # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 778075-781337 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCUN01000011.1 Streptococcus oralis subsp. oralis strain RH_1735_08 s_oralis_RH_1735_08_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 778075 36 100.0 30 .................................... CCCACGCACGTTTTACCGTCTAACTGATTA 778141 36 100.0 30 .................................... TGAACCAAAAATTTGGCTTATCACTAACTG 778207 36 100.0 30 .................................... GTTTGTATCATGACCTTTTCGTCTTGCAAG 778273 36 100.0 30 .................................... ATAGTGACAATACAGCTCGCAAGAAGGCAG 778339 36 100.0 30 .................................... GTTAAAGGCAAGGGGCGTACTCAAGTTTAT 778405 36 100.0 30 .................................... ATAATCAAGATAAAGAGAAATGTTGATGAT 778471 36 100.0 30 .................................... GTAGTAGCACAGGCTACAATCACAGCAACA 778537 36 100.0 30 .................................... CACTATCATGTATGTTGAAACGCTTGAGTT 778603 36 100.0 29 .................................... TGGTCGAAGCATCCACTGATTCTGCTTTG 778668 36 100.0 30 .................................... ACGCAAGATAAACGCTTGATAATTCTGAGT 778734 36 100.0 30 .................................... TACATCCCTGCCCTGGTAATACGAGACCTA 778800 36 100.0 29 .................................... TGAACTGAGACGTCTTGCTTACTTGAAGT 778865 36 100.0 29 .................................... CAAAGGCTTTGGTTGGCTTTTACAACCGC 778930 36 100.0 30 .................................... ATAAGCTACCACATTTCTCACAGCTGATTA 778996 36 100.0 30 .................................... CCTTTTATTTCTACGGCGTAGACGATCCAA 779062 36 100.0 30 .................................... CACTCAAACGTTGGGAAGTTGATCTTGGTA 779128 36 100.0 30 .................................... GTTTGGTATTCTGGGCAGGAGTTTGGATTG 779194 36 100.0 30 .................................... CAATCGAATCTGCTGCTCAACGCATCATTA 779260 36 100.0 30 .................................... GTCTGCGTCGTGCATTGTCTCGGATACTTG 779326 36 100.0 30 .................................... ACATTCGTAGGATCTGCCTTCAAATCTTTT 779392 36 100.0 30 .................................... CCAACAAATTCAATCTCAAAGAACTTGACC 779458 36 100.0 30 .................................... GGGTCTGGTTTAGGGGCAATAGTCTCAATA 779524 36 100.0 30 .................................... TGTCTGTCACTAGCGGTCGCCCGGTACGGA 779590 36 100.0 30 .................................... TGGTGGATCTAAGTTTACAGTCGACACCGC 779656 36 100.0 30 .................................... TGGTGGATCTAAGTTTACAGTCGACACCGC 779722 36 100.0 30 .................................... TCTTTTCCATAGCCCCCGTTGTGTCTACTA 779788 36 100.0 30 .................................... GCGGAATCTTGCTGATGAAGCAGGAATTCC 779854 36 100.0 29 .................................... ATTCTTAAAGCGTAGAATACCCTTATCAT 779919 36 100.0 30 .................................... TCGTCCAGCGTATCAGATGAAAGAAGCGAT 779985 36 100.0 30 .................................... TACAGGTGTTCCAGCTTGGACACAAGCTTA 780051 36 100.0 30 .................................... TCATGGAAGAAAAAGATGGTTATATGCTAT 780117 36 100.0 30 .................................... GCTGGTGTTAGTGGACTAATGGAAGCTGGA 780183 36 100.0 30 .................................... GGATTTCCGTGCCAGGCTTTCAGCATTGCA 780249 36 100.0 29 .................................... TGAGCTGTTAGCTTGGCTACAAAGAGCTT 780314 36 100.0 30 .................................... TTTTTTTGCGCCTTAAATCAAAAATAACAG 780380 36 100.0 30 .................................... CATTATTTAAGGTTTCTTCTAGTGCAATCT 780446 36 100.0 30 .................................... TTCGGATTTCCGAGTTCATAAAACTGAACT 780512 36 100.0 30 .................................... GTTTGCCCCTGTCTCATATTTAACGCTACC 780578 36 100.0 30 .................................... TTATACCATGAGAGACTTTTTCAGACAAAT 780644 36 100.0 30 .................................... GATTTCTAAATCCCAATACTCCAAAGCGTG 780710 36 100.0 30 .................................... CGAAATCACAGTTAAGAAGACACCGAACTA 780776 36 100.0 30 .................................... ACAGTAAAAAAGGAATGGGAGCCACGGATT 780842 36 100.0 30 .................................... CGACATGGTTACTCAGGGGCTAAGTCCAGC 780908 36 100.0 30 .................................... TGCATGGTTGAAATGAAATCATCATAACCT 780974 36 100.0 30 .................................... TGTTTGTGATAGCTTCTGTAGCCATTTTAG 781040 36 100.0 29 .................................... GAATTTGGATAAATGGGAAAGTAAATATG 781105 36 100.0 29 .................................... GTGAGTCCATGTACTTTCCCAGCTTATCC 781170 36 100.0 30 .................................... AAAACGAGGGATTTCTATAAATTCTCTCGA 781236 36 100.0 30 .................................... GGTTATGGCAGGAATACACTATATAAGATA 781302 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 50 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGACGATTTTCTATCCTATAATGATTTTGTTGAATGTTGTGAGAAAATGGAGTTTCTGACTAATCATAGCGATTCATTATATATTGTTTTATTTCCTTCCAATGAAGGTTATCTTCATGTCACGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCGCTAGAATTTATGTATAATCGCTTTACCAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACCTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTTTATCTGTAGAAGATCAAGTAGCATTAAAAATTTTGAATAATTTGTATCAGTACAAAATGAAAACAAAATTCCGTATTGAATCAGCCAATCCAATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTGAGATTTAAGGCTTTATAATGTTTTTGAGGGAACAAAAATCAAAATTGACGAATTTGAG # Right flank : CGGTCTGAATTAGATCTAACTCAGCAATCGGAACGGAAACGCCCTCTTTAGCTTCTTAAGAATAAGCTCACCAGTATGGTATAATGTCATATAGTAGCGATCAGAGAGGAAAGGAGCGGAAACGATGCTAGCTATTTGTATAGATTCTATAGGTGACAAGTCAGGGACCTATAAGTTGTTAAGAAACCATTCATCCTTGCCTTTTTCTTTAATCCAATCCAGAATCAAAGATCATGACACGGTGATAGAAGTAGACATGTTAGATTTGGATGAATTGAAAAAGGTTAGAGAACTCATCCGTGAGTTGAGTGCTATTGGGACCAAGGTTACGATGAGGGATTCGACTGGTATTATCACCTTAGAAATAGTAAATAATCTTATTTCTACTTTTGAAGAGATTGCGGCAGAGAGAGAAGAACTGGATGCTCTGATGTTTGAAGAGGAAGAGTGAGTGCCACGTTTTTCAGTGGATCACCAAGTTAGTTTTTAGTAATAGAAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //