Array 1 192061-191231 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSGR01000002.1 Bifidobacterium longum strain AM39-8AC AM39-8AC.Scaf2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 192060 33 97.0 33 ................................T CAGACGGGGCAGAAATGCGTAAACGTCTATCTT 191994 33 100.0 35 ................................. TCTATCTACGCAGGACGGCGGAGGAACAGAAGAAC 191926 33 100.0 34 ................................. GTGTCGTCAACAATGGCGGCGCACTGGCTATGGC 191859 33 97.0 34 ................................T TACACCTGATTGTTGCAATAAGCCGCCAAGTATC 191792 33 97.0 33 ................................C CGACCGTAGCGGTTGATGTAATCCTGTGGGATT 191726 33 97.0 33 ................................T CATGCTCACTGGGGTACCCGTATCCGCCGATAC 191660 33 97.0 34 ................................T ACCTTCAAAAGGTCTTCGGCATCATCGCTGTATG 191593 33 100.0 33 ................................. GGTCATGCAGCATTCTGTTGGCGCTCTCGTATC 191527 33 97.0 33 ................................C ACGCGAAGGTCGGCCGATGGCAGACGGCGAGCA 191461 33 100.0 33 ................................. TCCAACACAGGGTAGTAGTCCTTGATAATCATG 191395 33 100.0 32 ................................. AACATCGCTGGCGGGCCGCCGCGAGGGCGGTC 191330 33 100.0 34 ................................. CCCCATATCCTACACGGGGCGAAGCCATACCCGA 191263 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= =================================== ================== 13 33 98.4 34 GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Left flank : ATCTGCTGGCCGAGGGCTACGCCCGCGACGTGATTCGTTCTGTGCAGGACGCACGTAAGGCTGCCGATCTGGACATCGCGGACCGCATCTCGCTGGTGCTGACCGTGCCTGCTGACGACGTGGCCAAGGTCGAGCAGTTCAAGGATCTGATCGCCCACGAGACGCTGGCTACCTCCTTCGAAGTGAAGGAAGGTGCCGAGCTGAGCGTAGAGGTTGTTAAGGCGTGATGCTTTGACGCATTTAGTGCTCGCGGAGATTTTGGGTTGGCCAAGATTTCTGCGAGCACAAGTCATCTGATGGTGCCGTGCTCTGAACCTGTGGGGATGTTCTGGCGAAAGGCCGGGAACCTTCCACCAGACCAAAAGGTTTAAAGGGTGGAGGGCACCGGCCTTCCGACCTTTATTGTTGCATGACTATGAGTTTGGGAGATTACGCAATGGAGCATGTATTGATGTCTGAAGATCTATTCCTTCTTAGGACGTTAGGCGTTATCCAGCCCA # Right flank : GGCATGGAATTGTCCCCGCTATAGACGTTGCCACTCATGGTGGCAGACGCGGAGAGATAACCGCGCGACGGCTAAACCGGACGTCTGGAATTGTATAATTGGGCTCACTGTAGCGAGTATGCGAGGTGAGCCATGAGTCTTAGGGAGTTAAGGCAGAAACGCGGGTTAACCCAGCGTCAACTAGCTGACAAGTCAGGCGTGCCGCATACACGAATCGCCACGACTGAAACCGGGTCAAGACCTATCGAGAACATGAGTCTTGGCATGGCTATCAAGCTGTGTGACGCGCTCAGGGTATCTAATCCGCGCAAGCTGTTAGAGGCTGATAAGCCGAAAGAAAGCGCCGCCAAGTAGGCGGGCGCGTGCCCTAATCAATTCTTCGCCCGACTGTAGGCGTTGTGTGCAGTCGGCCTAAACTCACTGGGTTCACCCCATAGTCTAGGCACTCATGGCGTGTCCCAAGGTGGACGGGATACGCTGAAGTCAATTTTGAAAGTGAG # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 479634-479978 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSGR01000002.1 Bifidobacterium longum strain AM39-8AC AM39-8AC.Scaf2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 479634 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 479700 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [479706] 479784 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 479844 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [479892] 479892 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 479949 27 81.5 0 C.............C.....C....CG | GC,C [479966,479970] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 87.7 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //