Array 1 167324-169157 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMSF010000003.1 Bifidobacterium longum strain D41t1_190614_F6 NODE_3_length_169233_cov_30.5809, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 167324 36 100.0 29 .................................... GAACCTGTTGGCCTGGTCCCAGTCGGCCG 167389 36 100.0 28 .................................... ACCTCGTAGTTGTTGACGACGGTCTGGC 167453 36 100.0 29 .................................... GCCGCTGAGATACAAGCGTGCGGCGGCTA 167518 36 100.0 28 .................................... TGTTGGACAACAGGGTTTCGAGCGATGC 167582 36 100.0 29 .................................... CGGCCGCTAGAACAGCCTTCCGGCGTTCT 167647 36 100.0 28 .................................... CCGAACTCAAACGATACTGCGCGGACAA 167711 36 100.0 28 .................................... TCATGCGATCGCGTAGCTCAGCGAGCAG 167775 36 100.0 28 .................................... CTTCGCGTGTTGGTCCGCCGCGACGTTC 167839 36 100.0 28 .................................... ATTCCTTTCCTTGAACCTTGTAACTACA 167903 36 100.0 28 .................................... TGACATCGAACCGGTACTGGACTCTAAG 167967 36 100.0 28 .................................... TTGGGAACGCTATTAAATTACAGCAAAA 168031 36 100.0 28 .................................... GAGGCCCGCGACCTGATTTCCAGCGGCG 168095 36 100.0 28 .................................... GCCTCATGATGAAGAGTCGCAAATCATC 168159 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 168224 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 168288 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 168352 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 168416 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 168480 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 168544 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 168608 36 100.0 28 .................................... TTGGTGGTGTTGGGAGTCCGGCGCAGAA 168672 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 168736 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 168800 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 168865 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 168929 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 168994 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 169058 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 169122 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 29 36 100.0 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : CCGTTGTCTAAATGAAAGTGCAACACCCGTTAGATTGGAAATTGCCTAGAAAACCAGTCCGAAGGGATGTCGCACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 22958-23302 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMSF010000010.1 Bifidobacterium longum strain D41t1_190614_F6 NODE_10_length_101142_cov_31.6434, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 22958 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 23024 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [23030] 23108 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 23168 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [23216] 23216 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 23273 27 85.2 0 ..............C.....C....CG | GC,C [23291,23295] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 88.3 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCAGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCGATGGAATCGATGATGGACTTGGCCTTCTTAGCGGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTATCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACCTCGCCGATCTTCTCGACCGGA # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 127733-127117 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMSF010000007.1 Bifidobacterium longum strain D41t1_190614_F6 NODE_7_length_127841_cov_28.9618, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 127732 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 127667 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 127602 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 127537 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 127473 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 127408 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 127344 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 127280 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 127216 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 127152 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 10 36 98.6 29 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : CCCGCCGAGGCGTTCGCCGACGAACTGTTAGAATTACAGGACCAACAAGGGTGTTGCACTTCTAAATAGACATCGGGCAGCCTTGCCTCCGTTCTGCATCCAGCTGTC # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCGTGGAACACATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //