Array 1 108460-107878 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZLC01000029.1 Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal644 sal644_contig_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 108459 29 96.6 34 .........................C... CTGGCCACTCAACAGGGAAATATCGCGTGCGCAT 108396 29 96.6 32 ..T.......................... GGGTTTACTAGTATGAATACCCTGAATTTAAA 108335 29 100.0 32 ............................. CCCAACGAATCCATTTTTAAATGTCTTCGTAT 108274 29 100.0 32 ............................. TTAATCCCCACGGCCAGGAGGTATTGATCAAC 108213 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 108152 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 108090 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 108029 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 107968 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 107907 29 100.0 0 ............................. | A [107880] ========== ====== ====== ====== ============================= ================================== ================== 10 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 179459-179913 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZLC01000002.1 Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal644 sal644_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 179459 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 179520 29 100.0 32 ............................. ATTGGAACAGCATGGGTTGTCTTTGGTTTCGC 179581 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 179642 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 179703 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 179764 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 179825 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 179887 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================= ================== 8 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : | # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 445-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZLC01000111.1 Salmonella enterica subsp. enterica serovar Bovismorbificans str. Sal644 sal644_contig_111, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 444 29 100.0 32 ............................. AGGCGCAGGACGCGGCAGCGGCGGCGAAAGAA 383 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 322 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 261 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 200 29 96.6 32 .........T................... GCTACATAGTTGGTCTTCTTTTATCTCACTTC 139 29 100.0 32 ............................. CAACCGAGCTTATCACGAAGCTAGGCGGCAAT 78 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TATTTGGTCTTCTTTTTTCTCATTT # Right flank : GTATGAGTATATTGATTTATTTGAGACTTCTGCGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //