Array 1 67435-69055 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALQZ01000115.1 Streptococcus agalactiae LMG 15093 ctg120006340879, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 67435 36 100.0 30 .................................... GAACGCAATTCGCTATCGTCGTTATACGAA 67501 36 100.0 30 .................................... ATTACCTTTTAGAACAATTTTGTTATAAAA 67567 36 100.0 30 .................................... TAATTGCCAATGCTTACAATATCTTCGTCA 67633 36 100.0 30 .................................... ATGTTCTGAATTACCTTTCTCGACACTCCG 67699 36 100.0 30 .................................... ACCATCAAGGCTCTTATCTGCAGATTGTTA 67765 36 100.0 30 .................................... AAATGGTTGCCAATGACTTTCTAGAGTGAT 67831 36 100.0 30 .................................... ACAAAATCTTTTGTTGCTCCTGGACGTATT 67897 36 100.0 30 .................................... ATGTAAGGTATTGTAAAACTTCTTCTTGCG 67963 36 100.0 30 .................................... ACTGTTCCTATAATTAAAATAAAAGAGGTA 68029 36 100.0 30 .................................... TGTTCCAGTAAAAAGTAATTTTAAAGCATT 68095 36 100.0 30 .................................... CGCTCGATTGATGCTATCAACTATATTGAA 68161 36 100.0 30 .................................... TTCTTCAAGAGAACTTGTAGAACAGCTTCA 68227 36 100.0 30 .................................... AAGGTACTTTTAGCTTGTTCTTGTGGTGTT 68293 36 100.0 30 .................................... ACAGCTACTGTAAATTCTGCTTTTACGGTT 68359 36 100.0 30 .................................... TAGTGCAGTTGTCAAGGAGATTGTGAGCGA 68425 36 100.0 30 .................................... TTTAACCTTTGAAAATGTGAAAGGCTCGTA 68491 36 100.0 30 .................................... GCGATGATGGTAAGTCATCATGGACAGCGT 68557 36 100.0 30 .................................... TTTTACACACGATGTCAGATATAATGTCAA 68623 36 100.0 30 .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 68689 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 68755 36 100.0 30 .................................... TTAAAAGATTTAAACTATCAAGCGTCAATT 68821 36 100.0 30 .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 68887 36 100.0 31 .................................... TTGCTGCTAGACCCAAACAGTTTATTTTTAG 68954 36 100.0 30 .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 69020 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : TTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 14686-14519 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALQZ01000024.1 Streptococcus agalactiae LMG 15093 ctg120006340788, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 14685 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 14620 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 14554 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : GAGCTGTGCTGTTTCGAATGGTTCCAAAACTCCTTTTTTAGATAATGTGCGATCACGGA # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGATAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //