Array 1 213681-217193 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029289.2 Acidianus brierleyi strain DSM 1651 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================== ================== 213681 24 100.0 39 ........................ ACATACCTACTGTTTCTTGTCTGATAGAACGCATATGTA 213744 24 100.0 41 ........................ ATACAGAAGAATCTTAGAGCAATTTCTTCACCTATAAGAAC 213809 24 100.0 40 ........................ GGAAACTTTTGGCGGAGTTTTGCTCCACTGGATTAGATAT 213873 24 100.0 40 ........................ TGCTAGCGTCTTGGCCTTACATTTTAGGAGCGATAGCAAT 213937 24 100.0 40 ........................ CATTGGGTTTGTTGCTTTAGTGGGAGGAATCGTCGAGTAC 214001 24 100.0 40 ........................ AAATGTACTTAGTAACAATAGTATACCAATCATGCCCAGA 214065 24 100.0 39 ........................ CGATATTATCAAGGTAACATATACAGTATGGGGAAATGG 214128 24 100.0 40 ........................ AGACGTTTGTACGTCTTCAGCATACGTTAGCCATAATGTC 214192 24 100.0 40 ........................ AATAATCCAGATAGCTCAACTTGCGGGATTTGGGAAGTTA 214256 24 100.0 41 ........................ AAAAACCTTGAGGAGTAAAGGCATAGTAATAAGTGATAGAA 214321 24 100.0 39 ........................ TAGAGGTGAACCTGTGGATTTTAGTAAGAATATTATTGT 214384 24 100.0 39 ........................ CAATTTAAAGGGTTTGACCACGCGTACTTAGACTCACAA 214447 24 100.0 38 ........................ CAAAAGAGGTTGGTTGGAAATATTTTTCAACAATAATA 214509 24 100.0 40 ........................ AAAGAAATATTTAAAAACCCCCCAATATTTCTCAGAGAAA 214573 24 100.0 41 ........................ ATTTCAGATGGTGAACTTGCAGTTAATTTTAAACAATTTTT 214638 24 100.0 40 ........................ AGAACACATAAGGATATTCTTAGACTCAAATGCAGACAGG 214702 24 100.0 40 ........................ TAACGTTTTCAATGCATAGCTATTAATTATTTTGTAAATT 214766 24 100.0 37 ........................ CAACTTCACCTGGGATACGTGAAAGAGACGAGACGAT 214827 24 100.0 41 ........................ ACGTACCAGCGGATGGTCGGAACTCCTGAACTCGTAAAGTA 214892 24 100.0 37 ........................ GCGTCGACCATGTCAACGCCCACGCCCCAGCTCATTT 214953 24 100.0 40 ........................ ATTATTATTTAAAATCAGGGTTGAAATTGCAAAACTCAAA 215017 24 100.0 41 ........................ TCATAGATAATATTGACACTTATAAAAAGAAAACTGCGGAA 215082 24 100.0 40 ........................ TGTACTGCTCCAGTCACAACGTTGACTATTGCGTTTAATA 215146 24 100.0 39 ........................ GGTTCTCTTTAACAGAACCTAACGGTGTCTTCTTAGGTG 215209 24 95.8 40 ....A................... AGGTTTTGAGTTTTTAGAGTCTGGCGATAAGCCAGAAATT 215273 24 100.0 38 ........................ TCGAAAAGTTAATTGAGAAGGTAAATTCGAGTAAGAAA 215335 24 100.0 37 ........................ ATGGTGGAGCAGAATACGACTTTAGACTAGAATATAG 215396 24 100.0 42 ........................ TTCCATGTTAGCCTATAGGTATTCTGTTGATGGTACTTTTAT 215462 24 100.0 40 ........................ CTTATACTCAAACCGACAGAAACAGCATTAATTACTACCT 215526 24 100.0 37 ........................ AAATGGCTCAAAAAAACTCCCCAGTTTAGTGTAGGAA 215587 24 95.8 37 .............A.......... AGCTGTAAAGTAAAAGCTGCAAAAGTGAAGAGTTAGA 215648 24 100.0 40 ........................ ACATTTTCTACTGCGTCAGCACCGACACCTAACGGTTTTA 215712 24 100.0 40 ........................ TAGGTTTCAGCACTTTAGGGTATTCTTTTCTCAGCGACGA 215776 24 100.0 37 ........................ TTAAAAATCGGGGTTTCTTATATGGATAAAGTGAAAG 215837 24 100.0 43 ........................ AAATCATCAGTCGGCGGTTCTAGATAAGCGTTAGTAAACCATG 215904 24 100.0 42 ........................ ACGGAGTGGATTATACGTTTATGCTTTATGACGTTGATGATA 215970 24 100.0 38 ........................ GATTTGTAATTGATGTAGCTTATTTACAGTAGTAAGGG 216032 24 100.0 41 ........................ GTTTTTTTGGCTATTGATGGAGACGATGATATAAATTGAAC 216097 24 100.0 41 ........................ AGACTTTATGAATGATAAGCTCAAGATCCTGGACAAACTTA 216162 24 100.0 38 ........................ ACAATATACAGCACAGTTTACAATGTTAAGTCTTATTT 216224 24 100.0 38 ........................ CCAGCATTTCTTCTACCTGAACGCTGCTACTGGCGTAT 216286 24 100.0 40 ........................ AGCGGGAAAAGCAAAGCAGCTTAGAAAGGAGCAAAGAAAG 216350 24 100.0 43 ........................ CCGTACTAATCGTGGTTTATATAATATCATTCTTTCTATCGTT 216417 24 100.0 36 ........................ ACTTGCCTAACTTCATTCTAATTCTTCTAATTCTAT 216477 24 100.0 36 ........................ TATTCTATGGATGGAGAAATATAATGAAATGGATGG 216537 24 100.0 37 ........................ CCATTAAGTATAAGCTTATTATCATTATTACTAACTC 216598 24 100.0 41 ........................ AAAAGGCTAATAAAATGGGGATTTGTAGAAGCTGAAGGTAT 216663 24 100.0 39 ........................ GGTTGAGGCTAGTGAGGTTCTTCGTAGGTGCACCAACTG 216726 24 100.0 40 ........................ GTAATTTTCCAACTGTTTTACCAGGAAATCCAATCCACAT 216790 24 100.0 40 ........................ ATGTTCTCATTATCGTTGGGTGGAATGTAATGAAGCCGTT 216854 24 100.0 40 ........................ GAATATAAATCAAAATGACAAAATAATTCAAAGGTATAAA 216918 24 100.0 41 ........................ AGTCATGTATCTCAAAAATGTCGAGTCCTCTCTGGTAACAC 216983 24 100.0 39 ........................ TGTAGATTATAGTAATAGCATGTGGTGCATGAGACTTCA 217046 24 100.0 37 ........................ TCCACTGTTGAACCACATCCCCAGAACACTTCGATAC 217107 24 100.0 39 ........................ TAATTCTAACTATGAGGCTAGAGGAAGGGCGTGTACTAA 217170 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =========================================== ================== 56 24 99.9 39 CTTTCAACTCTATGGAAGATTAAC # Left flank : TTACAGGAAGGTGAAGCAATTAGAAGTTTAATAGTACAAAAATAATTACCAAATAGACAAATCTGCTGTTACTAATCCTAACGCTCTAGCTACATCTCTTAAAGAGACTACACCTATTATTTTCCCAGATTCTATAACAATTAAATGTCTAATTTTTTTAGTCGTCATTAAAAGTGCAGCATCGCTAACATCCGTGGAAGAATCTGCAGAAACTAAGTTAGTACTCATAATATCTTTTATAGGAGCACTTAAGGATATGTCGTCTGCAATAGCATAAACTATATCTCTCTCAGTAACTATACCTTTAGGTTGTTCACCCTCAGTTATAAGAAGAGAACCTACTCCTTCCTTTTTCATAATCTTACATGCAAAAGATATAGTAGTATCTTCTTCAGCCGTTACGGGAGGCCTAGAAACCAACTCTTTTAATATCATCGCTTATACTTAACTATAAAGAGATATTTATTACTTACTAGCTAAGGCTCTGTTTCGTTATCATT # Right flank : CCGAATGTTTTTATACTTCTATTATTTTTCTTTTTCCTTCTTATTTAAGGTTTTCTTTTTGTTGGTTTTTTAGTTGTTTTCTTTTTTTCTTTTTTAGAATTTTTATTCATTTTTTATCTATCCCGTGTGATTTCGGGATTCTCATGAAGAGAAATTTTTTGTCTTCATAAACAGAGCGTTAAAAAATTTTATCGTGAAGTGAAAGATTATCCCGATTTTAGAAAAAAATATAGGGATGAAAAGAAAAAATGGAAAATGCTAACAATCTCTTAATAATGAAATTTTCATTCTCACTTCATTAAGCAATTACCTTAAGTACTCATAATACCGAAGGAAATTTTAGGATAAGCAGACTAAATCAGTAATGTTTTAGTATTTTTAATTAATATTACTAAATTTCGTGAAGTAGGGGTCTTTTTATATTGCCTATTATTTTCTCACCCTTTTTCTCTATCAAATAGGTCTTCTTTTCTGTCTTTTGGTCTTTCGTCAAATAACAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACTCTATGGAAGATTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 2179526-2177835 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029289.2 Acidianus brierleyi strain DSM 1651 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 2179525 24 100.0 42 ........................ GAATTAGAAGTTATGTTGGTAGGTTCTAAAACTCCAGAGTTA 2179459 24 100.0 41 ........................ AATTCCTTAGCTATCTTCAGCCTAGTGTATCCGTTAATTAA 2179394 24 100.0 42 ........................ TGACCTGTAGAAGAAATCCATACCTAAATCTACTAGGTCTCC 2179328 24 100.0 41 ........................ TACAAGTGGAGAGCAGGGAGATCTACCCCAGGCTTAAACGC 2179263 24 100.0 40 ........................ ATTCCCATCTTGGGTTTTTTGACTGTGACATATTGCTCTC 2179199 24 100.0 36 ........................ CGTGATTGTGCCTACCGGCAATAATTCGATATATCG 2179139 24 100.0 40 ........................ TTGCTCTAACCGCTAAGGTGTCATACTCCATCTCATCGCA 2179075 24 100.0 42 ........................ ATACGCCCACCAGACGACACTACTTTTATCGACGTTCAGATG 2179009 24 100.0 40 ........................ TATTTTTACGTTTAGTCGTTTGCTATTTTTTTATCGACTA 2178945 24 100.0 36 ........................ TTTCGTTGCCTATAATAACCCTATTCGTCACGTTTA 2178885 24 100.0 41 ........................ CAACCCCCTGTATTTGACATCATTCAGAAATACGTAATACT 2178820 24 100.0 40 ........................ CATTAACTTCACTGCCATCTGCTTTTTATTACCCTTCAGT 2178756 24 100.0 39 ........................ CTAATATAACTCTAGTTAAGAACTAGTTTAAAAAAATAA 2178693 24 100.0 38 ........................ GGCTATGTTGATAAAGTTTCACCAACCGACATGGCACT 2178631 24 95.8 41 ....T................... TCATTTATGTGGAAATTGCTACCGTTATAGATCATCTTTTT 2178566 24 100.0 41 ........................ ATTACTGTGCTTTGTATTGGAAAAATATCAGCAAATGATAA 2178501 24 100.0 39 ........................ AGGGCAATTTTTGCTATAGGACCTAGGGCAATTTCCGCA 2178438 24 100.0 41 ........................ CTCGTTATAATTCAAAAGAATATCACTTGGACGGTTGACGG 2178373 24 100.0 41 ........................ TAATACCAGTATCACTTTTCCATATCCCTGTTACGAAAATA 2178308 24 100.0 41 ........................ AGTACTTTCCCTTCTTCCAAACGAAAAGACAACATAATAAT 2178243 24 100.0 40 ........................ GTTATTATATTTGTTACAGCGTCTAATACTTCTGGATTTG 2178179 24 100.0 40 ........................ CATTCTCATTCCTTTCATGCATGTCATTCTCCTTCGCCAT 2178115 24 100.0 41 ........................ AGATAATTTATATGCCAGTACGCGGCAGATCTACGAATATC 2178050 24 100.0 40 ........................ ACTATGACGCCTACTACTACTACTACGAAATCTAAAGCAT 2177986 24 100.0 39 ........................ TCGAGATCTATAGAACCCGCTCCTTCCTGTGTGAAAGTG 2177923 24 100.0 41 ........................ GTACAGGAAAACCCCGTCCCTCCTCCCGACGTGGAGGAGCC 2177858 24 95.8 0 .........T.............. | ========== ====== ====== ====== ======================== ========================================== ================== 27 24 99.7 40 GTTAATCTTCCATAGAGTTGAAAG # Left flank : CTCTTATCATGTCGAGTCTAGTCAACATCATTTACTTTTATGTTAATAGTAATCTAATTAGACAAACTACAATCAACTTTAGGTTAACTCCCGATTTTACAATTTATTTATTTTCAGTTATAACGCATTTATATCCATATTTATAACTTTTATTAATTAAATGCAAGTTTTCAATCGAGAAACTTCTATTTAGCAATAATAAGAATTTTAACTATTTTCATGTCTATATACTAATTTTTTCCTCTTTTTCTTTGTATCTTCATGATTTTTTCAAAAATCGGGAGATTCTTTCACTTTACGATAAAATTTTTTAACGTTCTCCAAATGAAGACTAAAAATTTCTCTTCATAAAAATCCCGAAATTACACGGGACAGACAAAAAATGAATAAAGAAAAAAGAAAATGAGTAAAAGATTAAAGAAAAAATATAAGGAAATAGACAAAGAAAACCTTAAATAATAAAAGAAGGAAAAAGAATAGTACAAGTATAAAAACATTCA # Right flank : TGTGATTGTCATAAATCATGTCGAAAACTAAAATTGAAAAATAAATATAAAATATATAATGTCTAAATTAATGGTTTTAATAAGTCGACTATTTGGCTTAAATTAGACGAAAATCCGTTTATTCTTAAAGTGATTACATTTGATCCATGAATAGCCATTGCAATACTAGGAACGGGATATATGCCATAAACCGTTTTTACTGATCCTCCTGCAATATATACTAGTTTATAGTTCTGGTATGTTGCATTATTAATACTCATGTTGGTGAAAGACGACTCTTCCTCTATTGATGTGTAGAAGAATGAGAAATATTTTGATGCTACTGTGGTATTGGTGAAATTTATGTCGGCTAACTCAATATAATTTGTGGAATTCTTTTGTGTTAGTATCATTATTAAGGCCTTGGTACCGGCTAAGCCCGTAGAATTTACTGTTAGCACTGTTGAAGTTCCATTTAAGAATTTTATTGATACAGTATTATTAGAATTTATTATTTCAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATCTTCCATAGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 2183565-2184738 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029289.2 Acidianus brierleyi strain DSM 1651 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================== ================== 2183565 24 100.0 40 ........................ GTTCTCGAACTGTATCCTCTCAACGTCGCTAGCAAACATT 2183629 24 100.0 42 ........................ TTTGACATAAAACTTTTTTATATTTAAACGTTTTAACGGCGT 2183695 24 100.0 39 ........................ TATAGTACTATTAGACCTATATGCCATGGAAAACGGGTT 2183758 24 100.0 39 ........................ AGTACTAGTAGCTCAGGAGGACCCTAAGTATAATATTCC 2183821 24 100.0 40 ........................ CTCCAGACAACACCAAGTAGTAAGGCGTGAACATGCTCAT 2183885 24 100.0 39 ........................ AGTGCTGTCCCGCAGCGTCATAAATCACCTTGTTCCCGT 2183948 24 100.0 43 ........................ ATTAATACAAAACCAGCTTTTTTATAAATTGTATTTGTATAAT 2184015 24 100.0 40 ........................ TTGACTGAGGGACATACTGTAACTTCAGCGTTTGCACTTC 2184079 24 100.0 40 ........................ GACTGCAATTGAGCTCCACAGCCCGCCTGGATGGTAGCAT 2184143 24 100.0 40 ........................ TAACCATTACGATGTATAGCTGATCGCCTACATTGGCCTG 2184207 24 100.0 38 ........................ CAACACTGTGCAAGATATTGCAAAAAAGTTCAACTGCG 2184269 24 100.0 40 ........................ TTTCACTCAAATCGCTCTTATTCCCTTCTCCCTTCCATTG 2184333 24 100.0 39 ........................ AACGTCGTTTGAGACGCTGACGGTGCCGTGTTGTTATTA 2184396 24 100.0 39 ........................ CAGCCTTTTCCCTAAATTTCTTTTCTGTTTTTATTATAT 2184459 24 100.0 40 ........................ AAAATATGAATGAGTAGAATTGAATTTTCTCTTATTATAT 2184523 24 100.0 39 ........................ AATTTCGGGCTTTGCGCCTGGCCCCTTTTCTAACTCTCT 2184586 24 100.0 41 ........................ CATCAACGTTAATGTTATGTGACTCGGCGTACTCTAGCACC 2184651 24 100.0 40 ........................ ATACATTCTTCAGGAGTAACGGTAATATTAAGAACTTCTT 2184715 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =========================================== ================== 19 24 100.0 40 GTTAATCTTCCATAGAGTTGAAAG # Left flank : ATTCCTTGATATGCTCTTAATGATGCTCCAGCTATAGGCTTAGGAGCCACAAGAAGTATATTATCACTTTTATCAGCAAATGTATTATGTAATCGCCTAATCATAAAATCCTCATGAAAACCTAAACTGAAAAGATAAGTTTTCATAGATTATTTATGGTATTACTTATTTTAAAGTATTATCTTCCGTTAACTTTACGCTAAAGTATGTGAAAATAACTATCTCTTGTACTAATTTTTTCCTCTTTTTCTTTGTATCTTCATGATTTTTTCAAAAATCGGGAGATTCTTTCACTTTACGATAAAATTTTTTAACGTTCTCCAAATGAAGACTAAAAATTTCTCTTCATAAAAATCCCGAAATTACACGGGACAGACAAAAAATGAATAAAGAAAAAAGAAAATGAGTAAAAGATTAAAGAAAAAATATAAGGAAATAGACAAAGAAAACCTTAAATAATAAAAGAAGAAAAAAGAATAGTACAAGTATAAAAACATTCA # Right flank : GTGTTTTCTAATCATTTTTTATAGTTCAAAACTTTCTCTTGAATAGCTTTGGCTAATGCCTTTATTTCTTCTGGAACTTTAACGCTTTCAATTCTATATTGCCCCATAAAAAGCTCCTCAATAAAAGGCATAAAAATCTTAATATTTTCAATATCTGCTACTGCATATTCAGCGTTTTTCATCTCTTGAGGAAATGGTGGTATCATATTAACTACTAGTCCCCATAGTCCTTCAGATCCATAAGCTCCTTTCTCAAGTCCTTCAATATATTTTTTAGTTTGCTCTATTGATGACTCGCTAGGATCTGTGACATAAATTCTAAACCTTTTCTGATCTGAAAGAGCTTTCCTGAACATATTTCTTTCAATCTCTACTATTTCATCGTTGAAGGTCACTAACGAAGGGTTATCAACTATGTATACATCAAAATTTCTTTTCAATATAGAATAGTAGGCGTCTTCTAATTTTTGTCTCAAAGAAGGATCCTCGGCTTTCTTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAATCTTCCATAGAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 4 2335305-2339156 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029289.2 Acidianus brierleyi strain DSM 1651 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================= ================== 2335305 25 100.0 42 ......................... AGAAAAAAATACAAAATCTAGAGAAAATAGCAAATGAAGAGA 2335372 25 100.0 42 ......................... GCAGAAGCCTTACTGCAGATACACAGGGCTTCCTTATCCTAT 2335439 25 100.0 41 ......................... ATTATCTTCACTTATAAAAGTCAAAACACAACCGTATAATT 2335505 25 100.0 41 ......................... TTTTCCGCATCCTTTGTGCTAATAATATAATTTTGTAACAT 2335571 25 100.0 41 ......................... TTAATTATATAATTATGTTTCTACCCGCGGTTTTATTTTTT 2335637 25 100.0 40 ......................... TCAACGGAGATATAGTTTTTTTTCTTCTTTCAATTCGCGT 2335702 25 100.0 38 ......................... ACTCATAACAACAAACGCAATTTTGACGAAGTTATACG 2335765 25 100.0 39 ......................... GACTGGAGGGTACTATTCCGCCTATAGCGCTTGGAGATG 2335829 25 100.0 41 ......................... TCTATTTTCAAAATATATGTGCGTCCCGATATTAATACGGA 2335895 25 100.0 38 ......................... TAACTCGGTAGGATAACTAAGTTAAGTCCGTCCTTTGT 2335958 25 100.0 41 ......................... CCCTTTAGGGGGATGTTTCCTTAATTAAATAATTGGAGAAT 2336024 25 100.0 43 ......................... ATGAATAGCCCTTCCATCGGTTTTGCAAGCATCTCATACCTTG 2336092 25 100.0 41 ......................... TAATTATCAACTTCATTTATATGTATTTTTCAATATATTAA 2336158 25 100.0 44 ......................... TATTAAGAAGAAAAGCTATAAATGCTGAATGAAGATGAAATTAA 2336227 25 100.0 39 ......................... TTTATTTGGGGTTTTTCCCTTTGGGTTATGATTGTTTGC 2336291 25 100.0 36 ......................... ATTACATTCTTTTCACCATGCCTTATGAAGCCTCAC 2336352 25 100.0 42 ......................... AAAAGATGTAGTTGAATATGAAATAAATCCTTTAATTTTAGA 2336419 25 100.0 43 ......................... TTCTGCTCCTCATAAAACTTAGCCAATTTATCATCATAACCGA 2336487 25 100.0 35 ......................... TAATAAAATATAGTCTACTTCACTATACATTAATA 2336547 25 100.0 40 ......................... AAATTGCGTATTCCTCTTCTAAAACAAATCACAAAACAAA 2336612 25 100.0 41 ......................... AAATATTCACAGTCTAGTATTAGCATCAGGTGGAAAATCAA 2336678 25 100.0 39 ......................... GCATAAGGGGGAATCTGTATAGCCCAATTATGAGAAATT 2336742 25 100.0 41 ......................... AACATTAGAAAAAAACGGATATCTTTTAATGGTGAATAAAG 2336808 25 100.0 41 ......................... GTTGTATGGTGAAATATTTGACGAGTTGTCACAAAAATTCG 2336874 25 100.0 36 ......................... TTAATTATATAATTATGTTTCTACCCGCGGTTTTAT 2336935 25 100.0 43 ......................... ATGAAAGAATCATTATGAGTGATATAGACCCAATTATTGTTAA 2337003 25 100.0 40 ......................... ATAGAAATATCAACAACATACGGCAATGCCACAGTACTTA 2337068 25 100.0 42 ......................... AAAAAAGTTGTTAAATGAAGTAGACCTATTTGCTATAAATAA 2337135 25 100.0 42 ......................... AGTACCTCTAGAATATTTACAATTTACTCCTAATATATCGGA 2337202 25 100.0 41 ......................... TTAAAATTGATAAGAAACGATACAATTGAGATATTCAATAG 2337268 25 100.0 42 ......................... AAATATTTTGTGAATATGAATAATATAATATCAACCATTCAA 2337335 25 100.0 42 ......................... TCGGGTTTAACATCGTCAGTAGCATAAGGGCATACCGAGTTC 2337402 25 100.0 40 ......................... CCGAAACATAACTATCTAATGCATACAAGAACTGATTTAA 2337467 25 100.0 42 ......................... TGCTTACCGAAGAGAAATGTTGTTATGTCAAAACCCTGGAAA 2337534 25 100.0 40 ......................... TTCCTCTTTCCGCCTTTCAACAGAAGATTAATGATGTGAA 2337599 25 100.0 40 ......................... ATCTGTATTCCGATCCAATCGCCCTCATTAATATATTATT 2337664 25 100.0 42 ......................... TCTATTAGCTCATCAAGCTTTGTTTTAACGTAATCCCTTATG 2337731 25 100.0 42 ......................... GCTCTAAAGTCTTCAAATGCCAGCACTTCTTTCCGAAGCTCC 2337798 25 100.0 40 ......................... ATATATACAAATTACTGGCACTAGGAGCGATAGAGACCAG 2337863 25 100.0 39 ......................... CTTAATAGTGTTCGTGCTAACATTAATGATAGTAGGACT 2337927 25 100.0 43 ......................... CTTCCCAACACTGTCATAGTATTTGGGGAGACAAAGACATACA 2337995 25 100.0 43 ......................... ATATACCATATGAGGACATTAGGGCAACTAATAAAGAGGAAAA 2338063 25 100.0 49 ......................... AAATCGGTCTCCTCGTAGTAAGTAGGGTAATCAGCGTTCACCAGGTAAT 2338137 25 100.0 38 ......................... ATTCGTTTTTGGCTAACTGCTTTAGTGTTTCTATATGC 2338200 25 100.0 42 ......................... CTGTTTATAAAAGATGTCTATAAGGACTTACCGATCCTTCAT 2338267 25 100.0 42 ......................... AACTTTACATCTGCGGTGAAGTAATCTCCACCAGTTAGCCGT 2338334 25 100.0 40 ......................... TTCCGCTCTGAGCAGGATCGAGATGTTAGCGACAAATGAG 2338399 25 100.0 42 ......................... TCTTCTGTTACATACTTTATGACGTAGTTGAGGCTAAGCCCC 2338466 25 100.0 38 ......................... TTCAACTCCAGAAAAGTGTAGGAGAAAACGGTTGCATC 2338529 25 100.0 42 ......................... TAGACTTTACACGTACCGTCCTTAAGCTTCATTACAATTCTG 2338596 25 100.0 43 ......................... TGAAAAAAGAAGATTAACTTTTTTCAGGTGTCAAAATCTATAT 2338664 25 100.0 42 ......................... TTCTTTATTTATCTCCTTATAATACCCTCCCCTAATTAATTT 2338731 25 100.0 42 ......................... ACAAACTTGTATCACAGTATGGACAGGATAGAACAGTGATAT 2338798 25 100.0 39 ......................... AGTGCAGACCTAAGTGCGTTCATGATAGCAACAGTTACA 2338862 25 100.0 42 ......................... TCAAATATTGCATCCCAATTTATGAATGACGCTTATTCATTT 2338929 25 100.0 44 ......................... CCCTGAAACTAAGATATTGTTGAATTATTTCCAAAAGTACTTGT 2338998 25 100.0 42 ......................... CTGTTTTAAAACATCATAAATCTCTTTCTCGATTGTAATCAT 2339065 25 100.0 42 ......................... TTTAATCTAGACGACTTTTACGAAAACAACTTCAGGAAAAAA 2339132 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ================================================= ================== 59 25 100.0 41 GTTTCATCCAAAAAGGAATTGAAAG # Left flank : TTTCAATAAATTTATAGACAATAGTCTATCCAATTCTCATTATAAAGATGAGAGAAAAAAGAGAAAAAATGAAAAATAAGGGAATACCATAAAAAGAGAAAAAGAAAAGGAAAGATAAAAATAGAAAATGTTCATCTCATCCCTTATTTTTTACCTTTAACTCTTGCAAAGATAAGAACATCACGAGAAGAATTAAACATTAATCTGTTATGTTGAAAAAAGTAGGATTACAATTTTGTAATACTATCATTACTAGGTAGGAGGTGAACATGAAGATTAAAAACGTAAAAGTTCGAGTTACAATGCGTACAAGACGAAATCAGACGTGTAGATTGAACGTTTAAAAGGCTGTCTATTCATTCAATTTCACGAGCGGACCATGCAAACAGAACGACGTCAGATCATTACAACGAATTAGTTCGCATGAAGAAGAAAGGAGATAAAGGAAAAGTTTATAAGTTTATTGTTCAGAATATATAAATCAGAATATAAATCCATCA # Right flank : GTTCGATAGCATTTATATATACAATCTCATATATTTCTTTATGTCTATATTTAAACTCTTACATATTTCAATTTTAGGTATAATATTGTTGAGTATACTTGGCATATCTTTTTCAGTTGGTTCAATATCTGTAGGGAATGGTCCCAGTTACGGAGTTTATTCTAATGGAAGGATTTTTATTATAGCCCAACAAGCTAATGAGTTGCAAGAAATTAGGGATAATAAAATAGTTAATACTGTTAAACTTCCAATTTATCCTCATTCTGTTCCTTTTAGATTGGCTTCTCTTGGGAATTATCTTTTTATAGCATATCAAAAAGGGCCAGTTATAGAACTAAATGATAAATCTGGTAAGATTATAACGGCTTTTCATATTCCCCGTATAGGAAAGTATCCTGCAATAATTTCTGCCCATAATTTTATCATAGTTTCTGCATCTTATGGTGATAAACTGTATTTTATTTTTAATAATTCAGTAAAGAACGTCAGTGTTATGAACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCCAAAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 5 2381484-2379295 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029289.2 Acidianus brierleyi strain DSM 1651 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================= ================== 2381483 25 100.0 42 ......................... TTTTCTACTATCGTGTCACCAACGTCGGGTAATTCCGTATGT 2381416 25 100.0 37 ......................... AGCTTTACCGAGCCCGAACCCTTTAATCTTTACTACG 2381354 25 100.0 41 ......................... TTATTGAAAATAAAGATAAAATAATATCTATTTTACAAAAT 2381288 25 100.0 38 ......................... AATTATTTAGAAGAATTGGATTTTGATTATGTTGTAGT 2381225 25 100.0 42 ......................... TAAAAAACTGCTTAATACCAAACTAGAAATTAAATTTGCACT 2381158 25 100.0 41 ......................... GGGACAAGCAAAACTTGAGAATTCGATAAAATTAGCTCAAA 2381092 25 100.0 41 ......................... TATTGAGATTTTGTTATTATGAATTGTAATATAAAAGATAT 2381026 25 100.0 42 ......................... TTTTCTACTATCGTGTCACCAACGTCGGGTAATTCCGTATGT 2380959 25 100.0 37 ......................... AGCTTTACCGAGCCCGAACCCTTTAATCTTTACTACG 2380897 25 100.0 41 ......................... TTATTGAAAATAAAGATAAAATAATATCTATTTTACAAAAT 2380831 25 100.0 38 ......................... AATTATTTAGAAGAATTGGATTTTGATTATGTTGTAGT 2380768 25 100.0 42 ......................... TAAAAAACTGCTTAATACCAAACTAGAAATTAAATTTGCACT 2380701 25 100.0 41 ......................... GGGACAAGCAAAACTTGAGAATTCGATAAAATTAGCTCAAA 2380635 25 100.0 41 ......................... TATTGAGATTTTGTTATTATGAATTGTAATATAAAAGATAT 2380569 25 100.0 42 ......................... TTTTCTACTATCGTGTCACCAACGTCGGGTAATTCCGTATGT 2380502 25 100.0 37 ......................... AGCTTTACCGAGCCCGAACCCTTTAATCTTTACTACG 2380440 25 100.0 41 ......................... TTATTGAAAATAAAGATAAAATAATATCTATTTTACAAAAT 2380374 25 100.0 38 ......................... AATTATTTAGAAGAATTGGATTTTGATTATGTTGTAGT 2380311 25 100.0 42 ......................... TAAAAAACTGCTTAATACCAAACTAGAAATTAAATTTGCACT 2380244 25 100.0 41 ......................... GGGACAAGCAAAACTTGAGAATTCGATAAAATTAGCTCAAA 2380178 25 100.0 41 ......................... TATTGAGATTTTGTTATTATGAATTGTAATATAAAAGATAT 2380112 25 100.0 41 ......................... TTTAATTTCTCCCTGAACTTCGCTTTATCTTCATCGGTCAA 2380046 25 100.0 41 ......................... TGATTTAGCCCGAGATCTAAGCATCTACGCGGATTATTATT 2379980 25 100.0 40 ......................... TATTTATTACATTATAACAACTGATGGAGAAATATAGTTT 2379915 25 100.0 45 ......................... AGAAATTGCGCCTGTGATTGCTCCTTCTATCCACCCAAGAGGTGA 2379845 25 100.0 41 ......................... TAATTCATTTGAGTTTCTAACTGACGTATATAATGATACGG 2379779 25 100.0 43 ......................... ATTAAATAATCATGAAATAAGCAAAGCAGACCTCAAAGGCCTA 2379711 25 100.0 40 ......................... GCTTTGACGGTCTACTATTCATCTTCTGGAATTTTATAAT 2379646 25 100.0 37 ......................... AAGTTTAACGGGGAAAAATGGGTGTCAGAATACAAAC 2379584 25 100.0 42 ......................... ATTCGCGACTTGTAGGTGATACGACATGACCTTCCTAGCCTC 2379517 25 100.0 41 ......................... ACTTTAAACATCATTGGTATGGGGGAGTAATATATCCCCCT 2379451 25 100.0 41 ......................... TATTGTCTTTCGTCGTATTTCCCTCCTGCATTTGCTAGTTC 2379385 25 100.0 41 ......................... TAGGGTACTCAATATTGCCATCAGTAAATAGAACATTTCAT 2379319 25 88.0 0 ..........CG..A.......... | ========== ====== ====== ====== ========================= ============================================= ================== 34 25 99.6 41 GTTTCATCCAAAAAGGAATTGAAAG # Left flank : TTTCAATAAATTTACAGACAATAGTCTATACAATTCTCATGAGAATGATGAGAGAAAAAAGAGAAAAAATGAAAAATAAGGGAATACCATAAAAAGATGATAGAAAAAGGGAAACAAAAGAGAAAAAATGTTCATTATCACCCTTATTTTCCTCCTTAAACTCTTGAAAAGATAAGAACATAACGAGAAGAATTAAACATTAATCTGTCATGTTGAAAAAAGAAGGATCACAATTTTGTAATACTATCATTACTAGGTAGGAGGTGAACATGAAGATTAAAAACGTAAAAGTTCGAGCTACAATGCGTACAAGACGAAATCAGACGTGTAGATTGAACGTTTAAAAGGCTGTCTATTCATTCAATTTCACGAGCGGACCATGCGAACAGAACGACGTCAGATCATTACAACGAATTAGTTCGCATGAAGAAGAAAGGAGATAAAGGAAAAGTTTATAAGTCTATTGTTCAGAATATATAAATCAGAATATAAATCCATCA # Right flank : AAAAGTAATTTCTTAAGTGACTTTCATCAATATCTTTAGAATGTCGATTACAAGAAATTTGCTCGATTACCTTAATAAACTGAGGAAAGAAAATGGCGTTCCTCCAGTTAATTACGCCAATACTGGTACTGCTAACTTAAGAGTAAATTACATGCTTAAAGAAAACCTTTTTAGTCATTACGATAAAGAAGGAAAAATACCAATATATTATTTCACTTCTACTGGAAATTATTACGGAGCTGAAGAATCTATAGGATTTTCTCATTCAGATTCACTTTATTTTAAGGATGGTGTAGTAGCATTAAAGCAAGGGAAACAATTAATATACAACATGATATATCATGATGAGGACAGTGATTGGGGACATAGGGATTCTCTTTTGGATCCATGTTTTAATTATGCTGACATATCAATAGCATGGAACGAAAGGAATCTTTTTCTCGATATCATTATGGTATCAGCGTGGATAAAATGGATAAATAAACCAAATTTTTCGAACG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCCAAAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 6 2386769-2388612 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029289.2 Acidianus brierleyi strain DSM 1651 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 2386769 30 100.0 41 .............................. GGGTATAGGAATTCCTATGCTATCCTTCTTAGTAGGGTCAA 2386840 30 100.0 37 .............................. TTTCACTAGTCACTTTCTAGTTTGACGTTCTCTGTTG 2386907 30 100.0 36 .............................. AATATTACAAAAGTGATAAAAAATATGCAGAAAAAA 2386973 30 100.0 39 .............................. GAAATGAAGTAGACCACGTTATTCCATTCCACATCAAAT 2387042 30 100.0 38 .............................. ACCGCTTTGTAGCGTTATGTAGCCCGACACTTGAATTA 2387110 30 100.0 36 .............................. TATAATATTTTCAGAACTTTTAGAATCATACAATTT 2387176 30 100.0 35 .............................. AATGTTTTTTGTTGCTTTTCAAAATTATTTCTTGT 2387241 30 100.0 36 .............................. CCGAGAATGTGAAGATATGGAACTTTTCTTTTTAAA 2387307 30 100.0 37 .............................. CCCTTAGTAATGCCCTTTATCCAATTAAGACAGGAAT 2387374 30 100.0 36 .............................. TCTTATAATTATTATGCTTTTCCTCCTTTAGACGGA 2387440 30 100.0 38 .............................. AAAATCCAGTAAGACGCGTCTTCTAAAACTGAGAACAG 2387508 30 100.0 36 .............................. GAAACACGGTGAGTAAAAGAAACTATTTGAATGTTC 2387574 30 100.0 38 .............................. CCGCCTTACTGGTTTTTGGAGTATTACACTGAAGTGTA 2387642 30 100.0 36 .............................. TGTGTGTAGGCATAAACTGTTATCCAAAAAAGGAAA 2387708 30 100.0 34 .............................. ATGCGGGATATCGTACAATACCAGGCAGGGTTGA 2387772 30 100.0 37 .............................. GGAGTCATAGAGAGCGACCAGAGCGAGACAATAAGAT 2387839 30 100.0 37 .............................. ACGATTACGTGCCTCGTCCAGGTAGGCGTTAACGCGT 2387906 30 100.0 38 .............................. ATAATACTAGTATTTTTTTCTAATTAGTTTGGTATAGA 2387974 30 100.0 36 .............................. CAACACCATAAACTTTCCTAGCCAATTTTTGAGCAT 2388040 30 100.0 38 .............................. ATTAATGGAAAAAGCAAAACAAGAAGGAGAAGTTTATG 2388108 30 100.0 38 .............................. CCTATTATTTCCAGTTTGGTACATGAGCTATATTTTCG 2388176 30 100.0 37 .............................. TTAAGACCGCGTTTTCCAAATGCAAGAAGTACTTGGA 2388243 30 100.0 36 .............................. AAATGCAGTCTTCATTTTCTATCACGTCGATACCTG 2388309 30 100.0 36 .............................. ACAGATTTGTTAATACTGTTTCCATCAACGCGGTAG 2388375 30 100.0 43 .............................. CCATTCGCTTTCACTAAAATTGATCTTGTTTCAAGATCTTCTA 2388448 30 100.0 38 .............................. AGAAATGGATTAAGAGATGCATATAGCGGTGTCAGAAA 2388516 30 100.0 37 .............................. TTCTCATTTTTTGCACAAATTACGCAAGATGACAGAT 2388583 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 28 30 100.0 37 GTTTCAAGTCCTCTAAGGATTTCTACAAAT # Left flank : TGATGTAGACTCACTGTTAAATTCTTATTACAGTGTATTAAGGCAGAGGTTTAAACCAGAAAACTCTAAGAAGAGAAACGTAATCTTAACTAATGTAACTCGATTGGAGTTCGACAAAGTAAAATTAAAGTTAATACAAGAAGAACCTAAATATATTGTTTTCATAAAATATGACGATGAAGCAGAAAAAGTATACGAAGAACTTAAAGCCGCTTTAAAATCACAGGGATTTGACAAAAGAGCTAAAGTAAAGAAGGCTATGGCTAAAGCTGAAAATTATATAGTAAAAGTATGGGAACAACCATCAACATTACCTATTGACGAAAACTTAGAATGGTACATTGTGGAAAGAGATCAAGTAGACGAGTATTATGATAATAATACAGGATTTAAAAACAATAATACAAATGCGCTAATATGGTAACTACAAAATATATTTACAATAATATGGGTTACTACAAAATATTAATAGCTGCTGCTGTATTCATACTATCACTATA # Right flank : TGGGTCTTATTTTTCATTATTTTTTGTCCTTATAAGCTTTGTTAATTTTCGGCAGTTTTTGTTTTCCTTATATTTCTCTTAGATTGCCGATGATTTTTTACGTAAATTAAATATGTTTTAGTATGAATATTTTTCCTTTCCCTTAGACAGCCGATTTCATATCCTACCAGATAAAATGAATAAAAATAAAAATAGAGAAATAATATATAATACTGATCATCTTCTTATGTCAATAAAAGGCTATAATGTTTATGTATTATTAATTAAAGTTCTTATCATTAAGCGGAATGAAAAATGATATAAAAATTTCCTAGAAGTACTACCGTTTAACGATTTAAGGACTTTTTCCTAATCGTGGAACGTTCTCATAATCCCAAGTTAAGCTAACACTTTTCAATACTAGTTCAAGCCATCTAATACGCGATGGGGAAAACTTAAATGAAGATGAAAGACTTTGCCATTATTGTTACTTAAAGAGAATATTATAAATTAAAAACAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAGTCCTCTAAGGATTTCTACAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 7 2393967-2390525 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029289.2 Acidianus brierleyi strain DSM 1651 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 2393966 30 100.0 40 .............................. ATATGATGAAGAATCTGAAGACATTACAGGAATTAGGATA 2393896 30 100.0 39 .............................. TTATATACAACCAGTTATTACATTTGCTGCTGATGGAAA 2393827 30 100.0 36 .............................. CTGGTCTCATTACTCTTCCTATCCTTTGCACTAACT 2393761 30 100.0 34 .............................. TATTACAAAACTGATAAAAAATGTGTATAAAAAA 2393697 30 100.0 36 .............................. ATTCAATCCAGAGAATTTGCTTAGCATTTAGCTAAC 2393631 30 100.0 33 .............................. ATCTATCATTTTCTGTAAATTGCGTAAAAAAAT 2393568 30 100.0 37 .............................. TTTAAAAACTTTTTTGTATCCAGACTGAAACTATTTG 2393501 30 100.0 43 .............................. CTTCTTCTGCTTTAAATGTTACAACTCTCATGGTTCTCTAGTT 2393428 30 100.0 36 .............................. TTGAATCTATCAAAAAGTTTTCCAATTGTTCTTTTA 2393362 30 100.0 35 .............................. ATATAAAAATATTTTTTATGAAAAAAGGGAATTAA 2393297 30 100.0 37 .............................. TTCTCTCTCTACAGAAAGCTCTTTCTCCTAATGAAAA 2393230 30 100.0 37 .............................. TGATTTTGGATACAATCGATGTTTATACTATCTCTAA 2393163 30 100.0 38 .............................. TCATCTGCCACATTCCTAATTGAAGAATAGTTCATAGT 2393095 30 100.0 38 .............................. TTTTACGAAAATGAAGGATTAAGACCAACAGATTATAT 2393027 30 100.0 37 .............................. TTTGAATTAATTTGATTCTACTCTTTCCCTGTGTTAA 2392960 30 100.0 38 .............................. AGAAACAAGAGATGTAAGGAAAAAGATCGAAATAGATA 2392892 30 100.0 37 .............................. ATGGAACAAAACGTTACGATAGAACACGAGAAAAAAA 2392825 30 100.0 38 .............................. TTTCGTAGGAATTTTGTTAGGCAAAACATCATCATCAA 2392757 30 100.0 38 .............................. TTCCTTATTGAAGAGGTAGAGTTGGAGCGATAACGCGA 2392689 30 100.0 38 .............................. TTCGTACTCCTTCCTTATTAGGTACCGTAGCATTTCGT 2392621 30 100.0 37 .............................. CATAGGCTCATGTTGGAGTCACCGTGAATGATGTTGA 2392554 30 100.0 36 .............................. TCCAATCCAGGACATAGATGAAGCTATTGATTTCTA 2392488 30 100.0 35 .............................. CTATAGTGTGTCAATTAAAATGGATACGAATGAGG 2392423 30 100.0 36 .............................. GTTTTTGGCATGGTGAACATGATATATTGAATATTC 2392357 30 100.0 36 .............................. GTTTTTATTGACATTCATAATTGTTTTGTGCAGATG 2392291 30 100.0 39 .............................. TCGTTGTTGGTGAAATTTTATCGACTACACCTGGTGACG 2392222 30 100.0 35 .............................. TGAGACCACCCATCTCTTCTCACTACCGAACTCGT 2392157 30 100.0 35 .............................. GCTGATCGAAATACCTTGGTTCCCTATGGGTTGGG 2392092 30 100.0 37 .............................. TCCCTCCTTCTCAGCGGAAACTCAGTTGCTACAGCGG 2392025 30 100.0 36 .............................. CCCGCATAGGGCATGAAAGTGGATATCCATATTTTC 2391959 30 100.0 39 .............................. TGTGATATGAATGCCGAAAAAATATTATTGCTATATTTG 2391890 30 100.0 36 .............................. ATTATTAAATTATAACTTCTATATTGCATAACTATA 2391824 30 100.0 38 .............................. TTTATTATATCTTTTAATAAGTACTTATTTACAATATT 2391756 30 100.0 36 .............................. TAAATTGAAATAAAAGCAAAAGCTTTTATATACGTT 2391690 30 100.0 34 .............................. TTTATTATCTTAATGGAATATTTATTCTATATTT 2391626 30 100.0 34 .............................. TTCATTTCTCTTTTTATTTTTCTTTTTCTCTTTT 2391562 30 100.0 36 .............................. TACAACATTAGCGTTTTTGTACCGTTCTTAAAGTCG 2391496 30 100.0 35 .............................. GAATCCAGTAGAACACGTCTTCCAACGTCATACTA 2391431 30 100.0 40 .............................. AGCTCATTCTCTCACCCTCTACTTGTCATTATTATCATTA 2391361 30 100.0 37 .............................. TTTATGCGGGATATAATACGTCGCCAGGTCACGTTGA 2391294 30 96.7 37 ..................G........... CTCGACATCATTCCTACGATTTACAAGCTCGCAGGTG 2391227 30 100.0 37 .............................. CAAATAAAAATAAGATTATGGTCGAAAATAGATTTGT 2391160 30 100.0 36 .............................. ATTTTCAGATATAGTCAAAATTGTAAACGGTATTCC 2391094 30 100.0 36 .............................. ATATTAGGAGAATTTGAAGATTTTTTAAGTAGAATC 2391028 30 100.0 38 .............................. TTATTGAAGATGTATTACAAGAACTAAAGCTTAGTGAT 2390960 30 100.0 36 .............................. TCTTGACGATTTTTATGACGGTTGTGAAACAAATTT 2390894 30 100.0 36 .............................. CAGCATCAAGTTTTGGTGAATTTTTTTCTAAAAAAG 2390828 30 100.0 37 .............................. AACTCATGAACGGTTCTACGTCTATTCCGTTATCTTG 2390761 30 100.0 40 .............................. GTTGTTATTAATTGTTCATATTTCATTTCTTCCGCCTCTT 2390691 30 100.0 40 .............................. TCTTTACTTTAGCCATGTTTTCACCCTAACGGCGACGCGA 2390621 30 100.0 37 .............................. CTTTAAATATGAGTTTTGACATATGTTATATTGTGAG 2390554 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 52 30 99.9 37 GTTTCAAGTCCTCTAAGGATTTCTACAAAT # Left flank : TTTAAGCCCTTTTCTCTAAGTCTGTAAAGGTAATAACTCAACTGAGCTTTGGCTGATTCTAAGTGCTTTGATGAACTTTTAATTTCAACTACTACCCCTGTTTCCTTCTTATAAGTGTCGACTCTCATACCTTCCATAATGAGAAAAGTCTCATCAGAATGTATCTTATGAATAGCTCTACCGTATTCAAGTCTCTTATTATCTTGGTAGGGTATGATATGCCTGCTCATTAACCAAACTTCCCTAGGACAAATATGAAGATACCATATTAGTGTACCCGTTACGTAAACATCATCCGCTATCTTATAAGGCTCTAACGGTTTGTCAGACATTATATAAATTATAATATGCAAAATATATTAAATTTTTTCTTTTACTAGGACTGTATTAAATACGATCTTTCCATTCTTACTAGTAAATATAACTGATAAAGAAAAAGAGATTTAAGAAAAACATTATAGAAGGATATTGAATACAATAACACATTTTTAGTAGAGCTA # Right flank : GGGTCTTATTTTTCATTATTTTTTGTCCTTATAAGCTTTGTTAATTTTCGGCAGTTTTTGTTTTCCTTATATTTCTCTTAGATTGCCGATGATTTTTTACGTAAATTAAATATGTTTTAGTATGAATATTTTTCCTTTCCCTTAGACAGCCGATTTCATATCCTACCAGATAAAATGAATAAAAATAAGTATCATTAACAAAAATCTTAATATGAAAATGAACTAAAGAACCGTGAGAAAGTATTAAAGTTCATGTAGTCTATTGCTTAATTACTATCTCAAAATATATTATTTTTCATATATAAAATACCGTTTAACACATCTAAATATCATTTTTATATGAGTAAATAACGATATGTATTAATAGTAAAATAATGAAATCTTGATAGCTGGATAATTTACGGCTCCAATTTCAAATTGAAATAATTAACTCATATGAGCTAAATATCCTATTAAATTATGACGGCAATAATAATATATTTAAGAACTTAAGTTTATAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAGTCCTCTAAGGATTTCTACAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 8 2483213-2480499 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029289.2 Acidianus brierleyi strain DSM 1651 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================= ================== 2483212 25 100.0 41 ......................... TTAATTTATTGTCTTGCTCTAAAAAAATTATAGAGAATAAG 2483146 25 100.0 44 ......................... ATTACCATCAAGGGGTGGAAGTTTTGAACTTAACGGTTTGGAAG 2483077 25 100.0 44 ......................... TCTAATATTTCCTTCAAACTTGCCATCTTTTTCGCCTAATTAAA 2483008 25 100.0 41 ......................... GCATTTTTTAATACACCTTTGTCATTAAACCGTAATCTTGG 2482942 25 100.0 41 ......................... CTTTTACATCTTTAATTAAGTACTTTGCATTTGTTTGAAGG 2482876 25 100.0 35 ......................... GATAAATAAAGAAAATGAAAATAAATCAGATTTTA 2482816 25 100.0 40 ......................... TTTTCAAGATCATATTCTCGTTCTCCAGCTTAATTATATG 2482751 25 100.0 42 ......................... ATAATTTCGGCGTAATTTGATGCCACACTTAATGTGTGGCAT 2482684 25 100.0 42 ......................... CATACTTTTCGTCTTTCATATAATCGATGGCGATAAATTCGC 2482617 25 100.0 41 ......................... AGTATTTCAATATACTGGATATCAGTCGTTTTGGGGTATGG 2482551 25 100.0 38 ......................... AACATGAAACAAATTAAGCATGAAAAAATTAAATTATT 2482488 25 100.0 40 ......................... CTGGTAATGTTCCTATTACCACGTTATAGTTCTGTAATAG 2482423 25 100.0 40 ......................... TTTTTGGTCGATATACATGTATGTTAATCTGTTATTTAAG T [2482415] 2482357 25 100.0 40 ......................... TACATACTCCTCTATTTTATCCTCATTATTTCCAGTTAGT 2482292 25 100.0 44 ......................... ATTTTCTAGGAAAAACAGAGAAAAAAGATTTAAATACTCCTTTA 2482223 25 100.0 36 ......................... ACATTCTAGAAAACGCGATACGCAATGCCTTTGAGG 2482162 25 100.0 45 ......................... AATTAGTATTCTTCAAAATATTTATATCGTAAAATTCTAAATCAC 2482092 25 100.0 43 ......................... TAATCATATCTGTGATTATTAAAACTGTTTTTCTTTATGTTAC 2482024 25 100.0 43 ......................... TTGGCGGATTTTGAGGAGAATAGCTTGTTAAAACTCCTACAAT 2481956 25 100.0 37 ......................... TTTCTTTTAACTCCTGGTCATTTTCGATAATTTGTTC 2481894 25 100.0 36 ......................... AAATTATCAAAGAAAGAAAAATAATTAGCTATAGCT 2481833 25 100.0 42 ......................... AAGTATAAGTTGCCGTTGCTGTCCTGCAGCAATTGGATTCCT 2481766 25 100.0 42 ......................... TGACTTTGCAAGACTGGAATAATTTCGTTAATAATTTGCTAT 2481699 25 100.0 40 ......................... TTAACTGTGACTTTCCTTTCGCTTGCTATCCTGTTCAATT 2481634 25 100.0 39 ......................... TTTAGTATCAGTTCTTTACCGTGTTTTGCGATGGCTGAT 2481570 25 100.0 41 ......................... AATTTTTTCGATTGGGTTCAAATTTTTATAATTTGAACTTA 2481504 25 100.0 42 ......................... ATTATAACTTCTAATGGAGTAAACATGGAAATCTAGTCTTAG 2481437 25 100.0 42 ......................... GATACATTAATGTTTTCAAGTATGTCTCTATTACGCTATCAG 2481370 25 100.0 41 ......................... TCAAGCACGATAAAGATATGTAAATGTTTCCCTGATGGCGA 2481304 25 100.0 36 ......................... GATACATTAATGAAGAACAAAGAAGGAAGCAATGGG 2481243 25 100.0 42 ......................... CACGTATGGCTTCTTATTGTATATGTCAAACTCAAAGTACTC 2481176 25 100.0 42 ......................... TTAATTAATACGTATTTTGTCTTTTCCATATCTATAGTATAA 2481109 25 96.0 43 ................G........ GTCTTACCTTTAGGATCACACCGTTCTTTAGCCTAAAGGCAAA 2481041 25 100.0 36 ......................... TTGAAAAAGCTGCGAAGAAACACAATTTGAGAATAG 2480980 25 100.0 43 ......................... TTTAGTATTAATTGTCCTAGGACATCATACCCATAATCTATAA 2480912 25 100.0 35 ......................... TTCATTTTTTCCATTTGAACATTTTCTTGTGTCAT 2480852 25 100.0 40 ......................... ACGTCAGGGAAGTCAGGGAGAGTTTTAAGACTCTCTCTGA 2480787 25 100.0 40 ......................... GGTTTTTCGAATAAATTTTCAATATACTGGTAATAATGTA 2480722 25 100.0 44 ......................... AAGTATAGAATAGGAAACATGTATTGCTTGCCAAATATTTTTAA 2480653 25 100.0 40 ......................... GTTAGCATTCCGTCACTCATCTCTAGGCATTCAAACCTAT 2480588 25 100.0 40 ......................... ATCTAACTTTGAGTATTCAACCCTGCATAATGTTTCCGCG 2480523 25 96.0 0 .....................G... | ========== ====== ====== ====== ========================= ============================================= ================== 42 25 99.8 41 GTTTCATCCAAAAAGGAATTGAAAG # Left flank : TTTCAATAAATTTATAGACAATCGTCTATACAATTCTCATGAGAATGATGAGAGAAAAAAGAGAAAAAATGAAAAATAAGGGAATACCATAAAAAGAGAAAAAGAAAAGGAAAGATAAAAATAGAAAATGTTCATCTCATCCCTTATTTTCCTCCTTTAACTCTTGCAAAGATAAGAACATCACAAGAAGAATTAAACATTAATCTATCATGTTGAAAAAAGCAGGATTACAATTTTGTAATATCATAATTACTAGGTAGGAGGTGAACATGAAGATTAAAAACGTAAAAGTTCGAGTTACAATGTGTATAAGACGAAATCAGACGTGTAGATTGAACGTTTAAAAGACTGTCTATTCATTCAATTTCACGAGCAGACCATGCGAACAGAACGACGTCAGATCATTACAACGAATTAGTTCGCATGAAAAAGAAAGGAGATAAAGGAAAAGTTTATAAGTTTATTGTTCAGAATATATAAATCAGAATATAAATCCATTA # Right flank : AATTGAAAGAGAAAATGATAGGAAAACTCGGTATAATAAATCCACAAAAAATTGGAATATTATTTAAGAATATCTTTTATGCTATAACTTATTTTGTTAAAATTTTCAATTTCGTCAAATGTACTTTCTTTATCCAGTGTAAGCATTCCTAATCCTCTTGATTTTCCGCCACCTATCTGTAATCCTTCAGTATTTATAAACTTTAGTGTATTCTTCCATACTTTTAATTCGTTTTCATTAGGTATTCTAAGAATAATTTTAAGCTCAATTTTTTGTGGCCTTAAAACCTCCTCGTCAAATAGGTGACCTCCCTTGTCTTCTTCATATGCTTTCATTTTCATTCTATCTATTGTTACGTGAGTTAGGAATGTTCCATTTTCATGAAATACTGAATCGCTAAATGTTAATTTTGAGGCAAAGAAATTAGAACCGTAAAGTCCATCTATAGGGCACTTAATTGAGGCAATGTATTCTCTTATTTTATCTTCTACATCTCTTAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCCAAAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 9 2535881-2531952 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029289.2 Acidianus brierleyi strain DSM 1651 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================= ================== 2535880 25 100.0 39 ......................... CTAGCAATATACTTTATTGTATTATTATCGATAAAAATG 2535816 25 100.0 43 ......................... ATATATAATGTTGAATTTGGTTCATATTTTATTACTAATGTTC 2535748 25 100.0 40 ......................... TCTATTTGCTTTATCTTTATCGATGTCCACTAACCCTTTT 2535683 25 100.0 41 ......................... GTCACGAAAATATTGCTATAGACAACTGTCGATATTGCAGA 2535617 25 100.0 43 ......................... TTTGGATTGCAATGAGTGGAGCTTTTCCGCCCTTACGTTCTAA 2535549 25 96.0 40 ..............T.......... AATTTGTAGACGTTTGGCAGATTATTAGCCGAAAAACCGC 2535484 25 100.0 42 ......................... TGTATATTCCAATTCATTTTGCAAAATTTCTAACGCAACAGT 2535417 25 100.0 43 ......................... ATTGTATGATTATTATGTAGACCTTTGCAGTATACTTTATCAA 2535349 25 100.0 42 ......................... AAAAATTTTTAATTCTATTTTCGCAAATACAAACTTTGAAAG 2535282 25 100.0 40 ......................... ATAAAAAAACGAAAAAAATAAAAATACAAAGAATTCTATT 2535217 25 100.0 43 ......................... TTTTTCTTCTATTTTTACGCATATACTTAATTACATTTTTTGT 2535149 25 100.0 43 ......................... TTTTACGTTACGTTAAAGTAAAAGTAGTAATATAATGACTAAA 2535081 25 100.0 37 ......................... TGTTCCTGAAGTCTTAGTAGTTGGTGCCTCGTTACTA 2535019 25 100.0 45 ......................... ACAAAAAGGTCTAATTTCTATAAGAACCGAAATCAATCCAGATAG 2534949 25 100.0 44 ......................... TATTCTTTCATTGTTTTCATTATCATTTTCGGTTCTATTTTTGG 2534880 25 100.0 40 ......................... TTTACCGTCTCGTTATTCTCTAGATTTGCTGTTCGGCTGT 2534815 25 100.0 43 ......................... CTGTTCATTTGAAGTGTATTACTTTTATTATTATTTAGTTGAG 2534747 25 100.0 40 ......................... TCTCTTTATCAAATTTCTCACTCTCGTAATTTTATTTCAT 2534682 25 100.0 40 ......................... CTCTATAGCGGGCAGGTTTCCAAACGATCGTCGATTTTTT 2534617 25 100.0 44 ......................... TTACTCATCATCGTTGTCACCTAATTGCTTCAAGTCGTTGTTGT 2534548 25 100.0 41 ......................... CCGTTTGTTATAGCTGGATCTGTTTTGTCGTTCGTATCCTT 2534482 25 100.0 41 ......................... TTTTATGCTTAATTTTTCTCACAACTGTAAAATTATTTCTT 2534416 25 100.0 42 ......................... TTTGTAACTGCACACCAGTCGTTGCATTGTGACACTAAATAG 2534349 25 100.0 39 ......................... ATTTATTATTCTTTAGCTAATTTTATCTTTAATTTTTCT 2534285 25 100.0 41 ......................... CGAAAACTTTTTGCTGGATATGATTTTATGGAAGCAGAAGA 2534219 25 100.0 42 ......................... TCTTTTTTAGGAGGTTGTAAAAAAACCTCCATCCCTTTTTGT 2534152 25 100.0 41 ......................... ATCATTACAACGTCAATATATAGTGCGTTTATAGTCCTCCT 2534086 25 100.0 41 ......................... AAATAATTGTCGTTGAGGTGGCTCACAAATGAAGGTAGCAA 2534020 25 100.0 39 ......................... GCCACCGGTTTCCCGGTTTCCGCACTGTAAGTCCTTACT 2533956 25 100.0 41 ......................... ATAGACCCCAGAGGCACACCCAAAACTTTCGAGCTCAGTAG 2533890 25 100.0 43 ......................... ATATCATGCAGACTTGGGTACACTATTACTAGTATGTCATTAT 2533822 25 100.0 41 ......................... CTAAATGATCTTGCCCCAACCCAATTTGCAATTTCTTTAAG 2533756 25 100.0 44 ......................... GCAGTTATATATTGCCCAACGGTTACGGTAGTTAATGAATTTAT 2533687 25 100.0 41 ......................... AATTTTTTCCAGCTCCGCCACCCATTGGCATTCTTTGGGAA 2533621 25 100.0 42 ......................... ATATATTCAAACACTATGTCCCTAAGTAATTCACTTAGGGAC 2533554 25 100.0 36 ......................... TTAAAAAGTCAAAATTCTTATGTGACAAATCGATAT 2533493 25 100.0 41 ......................... CCGCTTTGTTAAACTCAACCATATTTCCCCCCTTGATTTTA 2533427 25 100.0 42 ......................... AAAATTTGATTTAATTGTTGATCTAAATTTGACTTATTTTGA 2533360 25 100.0 38 ......................... TGATTTTATTAACGCGTCTGGTAATGAACCGTATTGTA 2533297 25 100.0 41 ......................... GTTTTTCTATAGACCCCAGAGGAACAGCCGAATGATATAAG 2533231 25 100.0 40 ......................... TCAATACTCATCATTTTTGTGCCTTCCCTTGCCATCACTT 2533166 25 100.0 41 ......................... TGTTTATCATGTTACATTAAGACCTAACTAATATTTAAATG 2533100 25 100.0 42 ......................... AATCAGTACAAAAAATCTATTGGAATTAAAAGAAATAAACAG 2533033 25 100.0 43 ......................... TGTTAAATATGAGAGGTGAATGAGACATGTCGGAGGAGAAGAA 2532965 25 100.0 42 ......................... TTATCTTATCAAAATCATTAAGTTTTAAGACAATAACCTCAG 2532898 25 100.0 42 ......................... ATTTCTAATTTAGCGCTTGCAAACGGTTCATATTCATCATGT 2532831 25 100.0 41 ......................... AAGTCTTTTTCAAACCCGTCGTCATACGATACGTATAGTAT 2532765 25 100.0 43 ......................... TATCATACTCGGGCTGAACCCGTTTGTCACATACTTATTCATT 2532697 25 100.0 45 ......................... TATTTTTCCATTAGCTTCCTTATGGCGTCTCTCTTAAACTCATAA 2532627 25 100.0 41 ......................... GAATTTTGACTTAACATGCTTGGGCTAAACCCATTTACAAT 2532561 25 100.0 42 ......................... TTTATGATATCCTTTACGCTCTTTCTTTGAATTAGACCTTTT 2532494 25 100.0 38 ......................... TTGAATTAGCTGGATACCTTGCTGCAGGTGTTGAATAA 2532431 25 96.0 40 ....T.................... TTGTAGGGGATATAGTAATATCCCCCCTGGAAGTCCTCAA 2532366 25 92.0 41 ....T......A............. GTTTCGTTTCCCATTTTTTTCACCATTTGATAATACCATAC 2532300 25 96.0 41 ...........A............. AGTAAGCTAAATATATTCCGCCGTTATCAGTTTGAATATTT 2532234 25 96.0 40 ...........A............. TCTTCGGTAACTATAGGCAATATTTCTGCATACCAACGCA 2532169 25 96.0 37 ...........A............. TAGGGCATAACGCCCTCCAACTCTACGCCTAAACTAC 2532107 25 96.0 41 ...........A............. TCCTCGTACCCGGGAGAGCCCAGCAAGGGCTCTTCGCCGGG 2532041 25 96.0 40 ...........A............. AAATCTTTAAATGCTTTATGAGAAATTACGAAAAAGTGGA 2531976 25 96.0 0 ...........A............. | ========== ====== ====== ====== ========================= ============================================= ================== 60 25 99.3 41 GTTTCATCCAAGAAGGAATTGAAAG # Left flank : TTCAATAAAAATTATAGACAATCGTCTATACAGTTCTTATGAGAAAGATGAGAGAAAAAAGAGAAAAAATGAAAAATAAGGGAATACCATAAAAAGATGATAGAAAAAGGGAAACAAAAGAGAAAAAATGTTCATTATTACCCTTATTTTCCTACTTAAACTCTTGAAAAGATAAGAACATGACGAGAAGAATTAAACATTAATCTATCATGTTGAAAAAAGTAGGATTACAATTTTGTAATACTATCATTACTAGGTAGGAGGTGAACATGAAGATTAAAAACGTAAAAGTTCGAGCTACAATGCGTACAAGACGAAATCAGACGTGTAGATTGAACGTTTAAAAGGCTGTCTATTCATTCAATTTCACGAGCAGACCATGCGAACAGAACTACGTCAGATCATTACAACGAATTAGTTCGCATGAAGAAGAAAGGAGATAAAAGAAAAGTTTATAAGTTTATTGTTCAGAATATATAAATCAGAATATAAATCCATCA # Right flank : ATATATCCGATAGAATATTACAACACTTTAAAGTAACTTTGACCTAAAGATATTCCGCCGTCTCCTGGTGGAACTTTACTGAGCGTTAACACTTCCGCTTTTGCGTTGTCTAATATACCTTTTAATATATATTCGTTTACTGAAGCTCCTCCGGAAACTAAGATTCTTTCCGGATTCAGTCTCTCGGCAGCATTAACTAATGCTTCTCCTAGCTTATATTGTAGGGTTGTAGCAATATCCTCTTTCCTTAAATTATTGTTTAAAAACCATTTGAACGCTTCTATTGTGTCTATTTCTTCTCCTTTTATAGGGAAATCGAAATCTAATATTCTTCCTTTCATCGCCTCAAGTTTTATTGCAGGTTCTCCTTCATATGTTCTTTCATGGCAAACATCTAAAAATGCCGAAACTGCGTCAAGAAATCTTCCAACACTTGAGGTATACAATGACGATTTTTTTGATTGCATTTCTAGGATTTTTATTTCTTTTTCAGATAGTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCCAAGAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA //