Array 1 260253-260790 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERVS010000004.1 Listeria innocua strain UCDL146 NODE_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 260253 29 96.6 36 ..............A.............. GGCGTAGATTTATCCCATCGTCTAATTGTTCCATTC 260318 29 100.0 35 ............................. AAGCTATATAAAATCAAATCTAAGGAGCTATCGCC 260382 29 93.1 34 ..............A.T............ CTCCAATCTTGATGTTTTTTAATCGTATTTTTCG 260445 29 93.1 34 ..........T...A.............. GGAGATTTTAAAATCTGATCATAATAACTCACTT 260508 29 100.0 36 ............................. TAGGTTGATTTAAGACCAATGTTTGATGTTGCTTCA 260573 29 100.0 37 ............................. ACCAAGTGGTCTTGATACACATTTGTGCCTGTTGTTT 260639 29 96.6 37 .....................T....... AAAATAGCAATGCCACAAACGGAATACGACAGAATTA 260705 29 100.0 29 ............................. TATAGACCTTTTCGACATTCGTTGGTTTA 260763 28 75.9 0 ..........T.C.C.A......-A...G | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 95.0 35 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTGCCACAACTTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGCTTGCAAAACTCAAGAATCAAAGAAGTCATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTCCAAGAAAACCGTTCATTGCATCCGTTATTTTAAATATTAAACTCAAAAACAGTAACTTAGCATAGTGCTGTTTTTTTGTTTTTAGTAAACTGTCGACCAGCAGTAGCGTAAAAATTCCGAAGACCGACAGGAAGTTGTGAATGCTTGGAGGAAGCAGAGTTTGGAGATATTTGCTTTGAAAAAGTATGCTGGCAAAAGTAGATTTTATCTGATTTTGAACAGGTCGACAGAAACAGCCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGCGCACG # Right flank : GCTCAATTTATAATCTTTGCTCACATTTAAAAATTACAGTTTTAATTTACATCCCTTAAAAAAATGCCTTTAACAACCATTGACATTTACCAGCTCTCTCAAAAACTCAAACATAATCTGGAGGACATCAACATGAAAAAAGTTCTAATGCCACTTATGCTACTCGCAGTTTTATTATATGGGTGTTCATCACAAAACGAAGAAGTAACGAAAGAAACTGCCATTTCGAAGACGATTTCTATACGGGCGGACTACACTATTCCAGCAAATTTGGATGAACTAGCAGCCAACAGTGATTCTATTGTTAAAGTGAAATTTCTACAGAATAAAGACATCGGTAAAAATGGAAGTACGATTAGTGAAGTAGAGATTTTAAAAAACTACAAAGGTAATTTTAAAAAAGGCGAAAAAGTAGATATTTCGGAACCGTGGTATTTAAGTAATGATAAATATGTCGCGGTTGAAAACTATATTGCACTTGAAAAAAATGAAGAATATAC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 331186-332078 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERVS010000005.1 Listeria innocua strain UCDL146 NODE_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 331186 36 100.0 30 .................................... TACCTCTTTCTTTCTTCGCTTCAGCCTTAC 331252 36 100.0 30 .................................... TGGATATTGAAGAAATAATCTTACCTAACA 331318 36 100.0 30 .................................... TTCACATAAAGTAGAAGGAGCTACCGGAAA 331384 36 100.0 30 .................................... TATCATTGTCAATGCGTATATCATGACCGT 331450 36 100.0 30 .................................... TTCCGCATCGTCATTGTTATTTGTGGCGCT 331516 36 100.0 30 .................................... CTCTCGCAGAGTTTGCGCGACTTGTTGACG 331582 36 100.0 30 .................................... AGAGTTTTTTCGTGAATATACAGTATTAAA 331648 36 100.0 30 .................................... TTGGTTTATTGAGCGCATTGAGGCTATACA 331714 36 100.0 30 .................................... TTTATCCCCTCGCAATACCTCAGTACCTCG 331780 36 100.0 30 .................................... TGTCGGTGTTTAACCTATTTTTAACGTTCT 331846 36 100.0 30 .................................... CTCGAAAACAGTCACACGTTTATCCTTTCC 331912 36 97.2 30 ..........................T......... GCGGCGAAGGGAGGTTTGTGAATTGGCTTC 331978 36 97.2 30 ............A....................... GGTTTATATTTGGTATAGTGAAAAATAAAA 332044 35 88.9 0 ..............C..........A....-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 98.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TGATAAGCTGACTGCAACGATTAGTGAGTTGATTGGTTATGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACAGTCATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATATCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAACAGAAGGATTTTCGCAGGTTATTCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATGTAAAGCTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGAATAAAAAAATTCTACGAG # Right flank : CCATCTCTTAACCTACTCCAACTAGAAAAGTTACACCATTATGAAAGAGAGGCCCCAACACATGACACAATACCACTACCTCGCTTCAAAAGCAGCACTAAAAACTACGACATTCGAAAATAAGACAAATTATATATATCAAAACGACTTAGACTTCCTGAGCTTGAATTTTGAAGAAAACGTTGATGAGCGTACAAATGAAAAATTTTCCTACTCCGAACATTTTAACCCAATTTGCAATTTCCAAGTCGCTATAAGTGAAGGGAAATTACCGTTAAAAGGTGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTATATTATAAAAGCTAGTAAAGAAAGCGATATCCTTGAACTATACACTTCATGGAACGGCGAAGAAAACTTACCTTTGACGAATAAAACAGAATTAGCTATAGAAGATTTAACGCCAGAAAAGTTGATTTTAAGAGACAGAGAACTATTAATTATTAAAAATAAGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //