Array 1 377-1468 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVZS01000060.1 Neisseria meningitidis strain MRSN430964 MRSN430964_contig00060, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 377 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 443 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 509 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 575 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 641 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 707 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 773 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 839 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 905 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 971 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 1037 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 1103 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 1169 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 1235 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 1301 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 1367 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT 1433 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : ATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //