Array 1 185744-185532 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLW01000021.1 Streptomyces albidoflavus strain CGMCC 4.1615 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 185743 29 100.0 32 ............................. TGCTTCATCTTGACGCCGTTCCGGACCTTGTA 185682 29 100.0 32 ............................. ACCTTCGACGTGATCACCCTGGTCGCGTTGGC 185621 29 93.1 32 ....C..................A..... GAGGCCGCTCCGGTCGTCACGAACATCATCGA 185560 29 86.2 0 ..............G......CAA..... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.8 32 GTGGTCCCCGCGCACGCGGGGGTGGCCCC # Left flank : GCAAGCCCACACCGCGCCGGCCTCTACGCCACCGGCAAAGTCCGGTACCAGGCGAACTGCTCGTGAGTGGGCATCCAGTGCTGGCCGCACCGGGAGCAGTACCAGCGCCAGTTGTCGGGGTCGTTGCGGAGGTAGGTCGTGTCCTTCCAGAGCCGGCCGTGGATGTCCGTGTGGCAGGCCCGGTCAGGACAGGGCGGGGGAACGGGCGTGGTGCGCGGGCGAGTTGTGGTCAGCATGGACGCCTCCGTGACTCGATGGGGTCAGGAGGGTGAAACGAGGGGGCTCGGGGCTGGGTGTGGGGCCGGGGCAAGGTGCGTTCGTTCGCGTGATGAATGGGGGATGAGATGCGCGGGGGGCCGAGGTCTGCTCCGTCGCCTCGGTCCGCTGCGTAGGATCTAGCGAGGGCTCAAGGCTAGGTGGGCATTTTGGGCCGAATGTCGCTATCGGTGAAGCTTGCAGAAACTGGGGCAGGGACGCCGTAAACCTGCTGGTCAGGGAGA # Right flank : ACCCCGCCTCACCCCGACCCGGCGCCCAGCGCCGCCACCCGCCTTGCTCCCCCCACCCCCACCTCCTACCATGAATGCGCTTTCACAACGCGTGAGGCGGGTCGGTGGGCTCGGGTTCTGGATGGTCGGAGCGGGCGGGACGGGATGAGGGTAGGGGCGCGTGGGTGACGGGGTGGCGGGGACGCCGACGGTGTATGACGTGGCCGGGCGGGCGGGGGTGTCGATCGCGACCGTGTCGCGGGTGTACCGGAGTCCGGAGTCGGTGCGGGAGGCCACGCGGGAAAAGGTGCTCGTGGCCGCGCGGGAGCTGGGGTACGTGCCCAGTGGGAGTGCGCGCGGGCTGGCCAGCCGGTCGACGGGGGTGCTGGGGCTCTGCTTCCCCGACTACTCCGACCCGGACGCCGAGAGCGAGGCGGCCGCGGTGGACGCCGACGACGACCACGCCTTCATGCTCTACTCCGACCAGATCATCCGGGGTATGGAGCGGGCCGCGCGACGGC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 559602-559814 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLW01000021.1 Streptomyces albidoflavus strain CGMCC 4.1615 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 559602 29 100.0 32 ............................. ACGGCCGAGAACCGGGCGCTGGACTGGCTGAT 559663 29 100.0 32 ............................. AACGGGACCCTCCAGTACCGGCTTCTGAACAT 559724 29 96.6 32 ...T......................... CCGATGCGCACGTGCTCCACGACGGGAGTGCC 559785 29 75.9 0 ............CCC......CAAC.... | A [559812] ========== ====== ====== ====== ============================= ================================ ================== 4 29 93.1 32 GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Left flank : CCGGCACCCACCCCCGCGTCGTCCCCGCCCACCACAGAACCCCTCCCCGTAGCCCGGTCTGCCGCTGCGGGTCACCTTAGGGGACGGGGGGGTTGGCGTCTTGGGGGCGAGGGGGTTGGGGGTGGCGTGGGCGGCTGGCACGGGGGTGGGGCTTCGGGGGGTGTGGGCGGGGGTGTTCGGGTGCGTTCGGGTGGGGCGCCGAGTGGTTCGGGGGAGGAGGGGGCGTGGCGGGGTTGGAGTTGACGCGGGGCGTTGTCCTGTTCCGATCCGCAGGAGCCACTGGGTGAGCCAAGTCGGTAGTTGGGGCTTCGTTTCGCTTGGGTGCGACGTTGCTGGGGGCGCGCTTGAGAAGGCGGAGTCAGGTGGGGGGAACTGGGGGAGGATGGGCGGGGGCTGATAAATCGGGAGGGGGTGCTATGCCGCTTTCATGCGAAAGGTCGCAATCGGCGAAGCTTGCAGGAACGGGTGGCGGCGCCGGGTAAAGGTGCAGGTCATGGAGA # Right flank : CCGGCCTCCCTCAGCTCTGCCCACGCCCCCTCACGGCTCGCAAACCCCACCCTTCACAGCAGCCCCCTCCGCGCCCGCGAAAAACCCCACAACCCGCTCCGCACACCCCCCACCAGCCATCCCTCCATGTTCCCCGTCCCCCACCACCAACAACGACCCCCCGGTTCGCGCCCGCATCGCCCGGGCCCAGGGCAACGGCGTGATCACCTCGTCCCTGTGGGCGACCAGCAGCAAAGGCCCGTCCGCCCGGCCCGGTTCCACAGGCGGCCGCTCCGGAGCCGGCAAGCCCGCGCACGTGCTGGTCCCCGGGACCTCGCCGCTGCCCGGGAACATCGGGCGGGTCGCGCCCAGTACCGGGTAGGCGGCGCGGCGTTCGCCGTAGGCCGACCACTGTTCCGTGAACGAGGCGGCGTGGGTCACCTGGGAGCAGAGCAGTGCGGTGCCTGCGAAAGGGGCGACCAGGGGCGGTGCGGCGGCGCGGGGTTTGCCGTCGCCGTCCC # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 184976-185489 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLW01000017.1 Streptomyces albidoflavus strain CGMCC 4.1615 Scaffold5_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 184976 28 100.0 33 ............................ GTCGTCATATGGCCCATCGCCTTGCAGGCCGCC 185037 28 100.0 33 ............................ GGCCCCCTGAGACACGAGGCCGACGCCTCGCCC 185098 28 100.0 33 ............................ GTGGTCCGTGTCGGGGGGTAGCAGCTCCACCCG 185159 28 100.0 33 ............................ GGAGGCTTTCGGGAGTCTCGGCACCCGCCTGGA 185220 28 96.4 33 .C.......................... GCCGACCACGATCGGGGGCAGGCCGAGCGAGCG 185281 27 92.9 33 .....................-..C... GAGGTTGCCACCGTCTTTGTGTTGGCCCACAGC 185341 28 96.4 33 ...........................T GGTCGCCACCCGCGACGCCAAGCGCATCGTCAC 185402 27 82.1 33 ....-............A....C.GC.. GTACGGCTTGCTCAGCGGGTGACCGGCCTTCTC 185462 28 78.6 0 ....C.................G.GGTG | ========== ====== ====== ====== ============================ ================================= ================== 9 28 94.0 33 GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Left flank : GACACCGACGCAGACATCACCCGAGCCGTCGAAGCGGGCGCCACGGGCTACCTGCTGAAAGCCGAACGCCCCGAAGAACTCTTCACCGCCATCAGGGCTGCGGCTTCGGGGCGTACGGCGCTGTCCCCGCCTGTGGCGCAGAGGGTGATGACTCACTTGCGGAACCCGCAGCCGGAGCTGACCCCGAGGGAGCGGGATATTTTGCGGCACTTGACGCAGGGGCTGGGGAACCGGGAGATCGCCCGGGCGTTGTTCATCAGCGAGGCTACGGTGAAGACCCATCTGGGCCGGATTTACCAGAAGTTGGGGGTGGAGACACGGGCGGGGGCGGTGGCTGTGGGGAAGGAGCGGCGGTTGTTGGGGTGAGGGGCGGGTGGCGGGGGTGGGTTCGTGGATTGGGGGGTGGGGTGGGTGGGGGGTGCGTAGGTTGGGGGTTGAGAGAGGGGGTGGTGATGAGTAAAGGGATGGCAAAGGCTGTCTGAAGGTGCAGGTGGGGAAGG # Right flank : GGTCCGTAGGCGAAGGCGTCCTCGGCCTCCATGCCGGAGTGGTCCTCGCGGGTCAGCCCTGTCAAGGGCGTGACCCTGGGTCGCCGACTGGACCACCCACATCAGGGTGCCCCGGGACCGAAGAAGACGACCACGTCAACAGCAGCCACGCCAACCACCCTCAACATCACGAACACACGATGGTCACAAAATCGCCACAGGCGGAGCATCCGGCACTCCCGTCATACCTCGCAGCCCCACACTGAGCGGACGCATCCGCATTCAGGGGGAATCATGAGACGCCAACTCGCCATCGCCGCAGCATCCTTCACCGCCGTACTCGGCCTCGCCGCCTGCGACACGGAGGTCACCTCCTCCCCCGACAAGCCCGCGGCCGCCGACGACGCGAAGCCCGGCAAGGAAGCCGACAAGGCCGAACAGGCTGAGGCCAAGGAGAAGGTCGCCAAGGTCGGCGACGCCATCACCCTCAAGGGCTTCGACGGCGAGAAGGTCGAGGTCAC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGAGGGCGGGGGTGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 210294-210444 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLW01000010.1 Streptomyces albidoflavus strain CGMCC 4.1615 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================== ================== 210294 24 100.0 39 ........................ TCTTTGACCGGCAGGTCGCATCGGACCGGCGCACAACCC 210357 24 100.0 40 ........................ TCCTTGACCGCGAGGTCGGCACAGACCAGCACCCCTCGAT 210421 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================== ================== 3 24 100.0 40 CAGCCCGGCCGGCGCTTGAGGCCA # Left flank : ACCTTCTTCCTCGGCCAGGCCCTGCTCGGGAACCTCTCCGCCTCCATCGGCGACCCCGGCGTCCTGCGGGCCGTCATCGGCGCCGCCCTCTACATGACCCTCATGGCCGTCTTCTCCATGGGCGTCGCCGCGATGCTCCGCTCCCCCATGCTCTCCCTCGGCATCCTCGTCCCCTTCTTCTTCCTCGTCTCCTCCATCCTCGGCGCCGTCTCCGCCACCGAGAAGATCGGCCGCTTCCTCCCCGACCAGGCCGGCTCGAAGATCATGCAGGTGGTGGCGCCGCTGAACGACGACACCCCCTACGGCCCCTGGGGCGGCCTCGGCATCATGGCCTTCTGGGTAATCGCCGCCCTCGCCATCGGGTACGCCCTACTCCGCCACCGCGACGCCTAGCCAGACGGGACCAGGCCATCGACCAGGTGGCCTCAAGCGCCGGCCAGGCTCAGTGGCCTCAAACGCCGGCCAGGCTCAGTGGCCTCAAACGCCGGCCAGGCTACCGA # Right flank : AAACCCCCAGCCCACCCCGGGAGGGAACTTCCGCTTGGCCGGAACCGAACGCCGGTGACTATCCTCCTTACGTTGACGGGGACAACCCCGGCAAGGAACTCTGTCGACGGGTGCGGGGAGCACATGATCGAGGCCACCGGCCTGACGAAGCGCTACGGCGCGAAGACCGCCGTGCACGACCTCTCCTTCCAGGTGAGGCCCGGCACGGTGACGGGCTTCCTGGGCCCGAACGGCTCGGGCAAGTCCACGACGATGCGGATGATCGTCGGCCTGGACGAGCCCACCAGCGGCCATGTCACGATCGGCGGCCTCCCCTACCGCCGCGTCCCGAACGCCCCGCGCCAGGTCGGCGCCCTGCTCGACGCCAAGGCGGTGCACGGCGGCCGCTCGGCCCGCAACCACCTGCTCTGCCTCGCGCAGCTCTCCGGCATCCCGGCCCGCCGGGTGGACGAGGTGCTGGGCGTGGTGGGGCTCCAGGACGTGGCGCGCCACCGCTCGAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 545535-545322 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLW01000010.1 Streptomyces albidoflavus strain CGMCC 4.1615 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================== ================== 545534 24 95.8 40 G....................... TTCTTTTCGGGGGGCGGGCCGTTCCCCGGTCCCGGTGGGG 545470 24 100.0 38 ........................ GTTTTGGCCGGGGTTCGTTGTGCCGTGCCGGTCACTGA 545408 24 100.0 38 ........................ GTTTTGGGCGGGGTTCGTTGTGCGGTGCCGGTCACTGA 545346 24 91.7 0 ..........G.....T....... | C [545324] ========== ====== ====== ====== ======================== ======================================== ================== 4 24 96.9 39 TGGCCTCAAGCGCCGGCCGGGCTG # Left flank : CCTGGGAGGCGGCGCACCGGGCGGCGCGAGGAAAGGAGCCCTCCCCATGGCACTCGGCGTACAGGAGCGCGAGGAATTCCTCGCCGGCCGGCATGTGGCCGCCCTCGCGGTGGAGCGGGGGGACGGGCGGGCGCCGCTGACGGTGCCCCTCTGGTACTGGTACGTGCCCGGTGGGGAGGTCCGGGTGATCACGGGGGCCGACTCCGTCAAGGCCCGGTTCATCTCGGCCGCGGGGCGGTTCAGTCTGCTGGTGCAGCAGACGGCGCCCACGTATCTGTACGTCAGTGTGGACGGGCCTGTCGTGTCGGCCACGCCGACCACCGTGACCGACATGGTCACCGAGGCGTCGCGGTATCTCGACCCCGAGGGGGTCGGTGACTACGTGTCCGGGAGTGGGGTCACCGAGAGCGACTCGGCCGGGCTGCTCACTCTGGCCATGCGGCCCGAGCACTGGCTTTCCGCCGATCTCGGCTGGGGGTAGCGGGGCCGGGCCGCAGCCG # Right flank : TGTCGGGCGGCTCAGGGGTTCAGGGGGTGGCCGGTGGTGGCGTCGACGTGGGTGGGGACGGGGTCGTGGTGGGTGCCGACGGTGGGGGTGCCGGTGGGTTCGAAGAGGAGGATGGTGGCGCCGGTGGGGGCGTGGGGCTTGTGTGCGGTGCCTCGGGGGACGGTGAAGACGGAGCCCTGGGGGAGGTGGACGGTGCGTTCTCCGGCGGGCTCGCGCAGGGAGATGCGGAGGTCGCCGGTGAGGACGAGGAAGAACTCGTCGGTGTCGTCGTGGGCGTGCCAGAGGTGTTCGCCCTCGACCTTGGCGACGCGGACGTCGTAGTCGTTGACGCGGGCGACGATGCGGGGGCTCCGCAGGGCGTCGAAGGAGGCCAGGGCCTGGGCGAGGGCGACGGGGTCGTTGCTCATGGGGTCATCCTGGGGCGTTCCGCCGGGGCGTCGTGAGTGCTAGGAATCGCACATGGCGAAAGAATCCTCGCAGGAGCGGCAAGGGGCGGAGCC # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGCCTCAAGCGCCGGCCGGGCTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 7385-6929 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLW01000015.1 Streptomyces albidoflavus strain CGMCC 4.1615 Scaffold9_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7384 29 100.0 32 ............................. GCCTCGGGCGGGTAGTGCGCGCGCTGAGGGTC 7323 29 100.0 32 ............................. GACTACACCCTGCCCGTGTTGGGCATGGCGTA 7262 29 96.6 32 ........T.................... GTGTGGAGCTGACGGCGGAGGTACTCGCTGCG 7201 29 93.1 32 ...........A.....A........... ACGTACATGGAGCTGTTCGAGGAGTACAAGGA 7140 29 93.1 32 ...........C.............C... GACGTCGACAAGTGCTACTGGCGCCTGGTGGA 7079 29 82.8 32 ...T..T...T..A......C........ TCCTCGGTGGTCAGCTCCTCGCTGCCCGAGTC 7018 29 89.7 32 A.......T...C................ TCAGGGAGTCCTTGAAGGGTCTCCAGGAGAAA 6957 29 86.2 0 .......A....C...T......A..... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 92.7 32 GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Left flank : GGTGGGGGGTGGGGGGGGTGACTGGGGTTGTTGTGGCGGGGGAGGGGGCTGGGGTGGCTTTGCTGGTCTCTTGTTGGGTTGCGGTGGGGGGATTGGGGGAGGATGGGCGGGGCTCTTGATGGGGTCGAGGGGAGGGTTGTATGCGGCTTTCAGGGTAATTGCCGGAATCTGGCAAGCTTGCAGAGATGGGGTGTGGGGGCGGGTAAGGCCGCAGGTCATGGAG # Right flank : AAGCGGTCGGCCGCGTGCCCCGCCTCGGCGTGCTCCGCTCCGAGGCGCCCCCCACCCCCTTCGAGTGATCCCCCACCCCCCAAGTGCATCCCCCCACCCCCCGGGCAGCCTCCTCCAGGGAGTTCGTCCACCCGAGAGGAAGCGCCGCGTGGGACTGTCACGGAAGTACGGAACCGCTATCACCGAAGGGCCGACCCCGGCCGATGTCGCCGGGCAGGCTGCCCTGCCCTACCCCGACGGGTGGGCTGCCGTGGCCTTCTCCGAGGAGTTGACGAGAGGGAAGGTGCTCACCCGGCCGCTCGCCGGGGAGGATGTCGTGCTGTACCGGCTCGGGACCGGTGCTCTGCGGGCCGTGAAGCCTTACTGTCCCCACCTCGGCGCGCATCTGGGGCTCGGCAGGGTCGACGGGGAGGACCTGGTCTGTCCCTTTCACCTCTTCGCGTTCGGGCCCGACGGGGCCTGTGTGCGGACCGGGTACGAGACGGCGCCGCCCCGGTCGC # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 42991-42781 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLW01000005.1 Streptomyces albidoflavus strain CGMCC 4.1615 Scaffold15_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 42990 28 100.0 33 ............................ CCACAATGCGGCGATCGACGCCGCCAAGCAGCA 42929 27 92.9 33 .C...-...................... CCGGCCGTCTGGGCCCCGGCGCCAGGTCGGGCC 42869 28 92.9 33 .C..........A............... CCCGGAGCAGTGCGCGAGGAGCGCGGCGGCTTC 42808 28 89.3 0 ...........AA.........C..... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 93.8 33 CTGCTCCCCGCGCGTGCGGGGGTGAGCC # Left flank : GTCTCCACGCGGGGGCCACGAGCAAGGCTCAGGCTCACAGGGCCGGGCCGCTGGATGAAGCGTCGGCTGTGACAGGGCCGCGCTCCGGGTTGCTTTGTGGAGGTGGCGACTTGGCTGCGACGAACTCTCTGCCCCGGCTAGCTTCTTCATGGGCGGTGCTTGGGGGCAGCTGGGGGAGGGCCCTGCTGTCAGCGGGCTTGGCCTGTCGGGTGCTCTTCTCGACTCCGCTTCGGGGTTGGCTGGGCAGATCGCCTTTGCGGAGACGGGTCGCGCGGCCACGATCGGGACCATCCCCAGCGCCCAAGGTAGGCAGGCTCAGGCAGTGGCGCCGGGGCTTGGTGCTTCTGCCGGCCGATGACCGGGATGGCTATGAATGCAGTGCTCTGCGGCGAAAGCAAGGCGGCGGGGGAGGGATGCGGGCGGCGGAGGCTAGGGTGGCGGACATGGCGAAGTTGGCGTGGAACGGCGACTTGCCGAGGTGAAGATGCAGGTCAGGGAGA # Right flank : TCCCGGGCTGCAACGCACTGGCCATGAGGAGCCCGCGCCCTTGAGCCCCGCAGAGCCATGGTCGTATCCCTGCGATGAGAAGGAGCCGCATCCTCGACCGACCTAAGCGTCGATCGGCTAGGAAGAGGCGAACTGGGCGCCACCGGAGAGGACTTCCGCAAAACGTGTCGGGGGCCTTCACTCCACAGCGCCCCTGCTCACCGACCGTATGCCCAAGGCGCACGACGTGGCCCGCCCACGAGCCCGTCAGGCTGTCCTCGGCCCCCCGCGCGCCCCAGTCAGGAGCGCCCACCCACCGCTAGCCCCGCCCCCGCCTCCCCGGCAAGCGGTCACGCAACCCCCGCAAACGGCTCTGCCACGTGCTCGCGGCAGGCAGCGCCCCCGCACCCGCACCCGCAAGCTCCCCTCCCCGGTCCTGCCAAGCCGGGAGCATGCCCCCGAGGCGAGCCCAGGCAAGCCCAGGCGAGGCCCACCGGCCGCCCCTCTCGCCCCGCCACAAG # Questionable array : NO Score: 3.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [2,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //