Array 1 39074-38310 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIHM010000111.1 Escherichia coli strain B-20 ESC_QB0120AA_AS_NODE_1_length_99479_cv_8.437827, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 39073 29 100.0 32 ............................. GCATTCAATATTCGGTTTTTAACTGCGGATTC 39012 29 100.0 32 ............................. AACCCGCGCCGTCGGCTATAACATCTCTGAAA 38951 29 100.0 32 ............................. ATTTTTGCGGTATTCTCCCAGCCGCCCAGCAG 38890 29 100.0 32 ............................. GTCCATGGCCTGACGAAGCTCGTAATATTTTG 38829 29 100.0 32 ............................. ACGACCAAATGATCTACGCGTATTGCCACCTC 38768 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 38707 29 100.0 33 ............................. CCAAAAATGCGCCCCATGCGCACAAATTCGCGC 38645 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 38584 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 38523 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 38460 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 38399 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 38338 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 13 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTCGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 55761-54573 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIHM010000111.1 Escherichia coli strain B-20 ESC_QB0120AA_AS_NODE_1_length_99479_cv_8.437827, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55760 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 55699 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 55638 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 55577 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 55516 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 55455 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 55394 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 55333 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 55272 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 55211 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 55150 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 55089 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 55028 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 54967 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 54906 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 54845 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 54784 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 54723 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 54662 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 54601 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCCCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17710-16361 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIHM010000239.1 Escherichia coli strain B-20 ESC_QB0120AA_AS_NODE_32_length_42493_cv_7.047774, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17709 28 100.0 32 ............................ GTATTGCCTGACTATTTCACGCAACAGATCGC 17649 28 100.0 32 ............................ TCTAATATTTCAAAACCCCAACGACTGCCAAT 17589 28 100.0 32 ............................ ACAGGCACCCGGCTGATGTTCGTAGGCGACAT 17529 28 100.0 32 ............................ TGGTGGCCGGAAGAAGCTGATCACATCATGTT 17469 28 100.0 32 ............................ CACATTATGAATCACACGATGGCGATGCGTGA 17409 28 100.0 32 ............................ ATCACATTTAATTCCGTGTTTCGTTTTGAACA 17349 28 100.0 32 ............................ GAACTCCCTTTCGTGGGCGGTACGTAATGATG 17289 28 100.0 32 ............................ GGAAAGTTAAGCGCCAGCGCGGCGTTGTGGGG 17229 28 100.0 32 ............................ GGAATCGCCCCTCGCTCTCAATCCAGAATTTT 17169 28 100.0 32 ............................ AGTCCGCGCGATTTCATTGATTAACCGGAACC 17109 28 100.0 32 ............................ GGGAACAACAGGACACAATCCGCAACGGTGAC 17049 28 100.0 32 ............................ TCAGCGACGAGCTGCGCCGGTGGGCACGTAAT 16989 28 100.0 33 ............................ GGTACTAAATGCGATGATCACCCCGAGCGTGAT 16928 28 100.0 32 ............................ CACCGGGCCTGCTCAGTCGCGCCGACGTCCTG 16868 28 100.0 32 ............................ AGTTGAGTAGCGTGGGACGCGATACGCCCAGC 16808 28 100.0 32 ............................ ATCCTGATAATTCAAGTCTGTGATTACCAGTA 16748 28 100.0 32 ............................ TACTTGTGCTGAAGCACTGGCATCCAGAATGC 16688 28 100.0 32 ............................ AGTACGCTATTACGCTACCCTACCCAAAACAC 16628 28 100.0 32 ............................ ATGTTTATTCCCTGATTAATGACGCCGTGTTA 16568 28 100.0 32 ............................ ACATCGTTTACTCCGTTCGCCGCGTTAATGCG 16508 28 100.0 32 ............................ ACATTGATCAGGTTATTTCAAATACGCCCGGC 16448 28 96.4 32 ..........................G. AGCAAGCTGTCTCGCCCCTTCGGGCTTCCAGC 16388 28 85.7 0 ..G.................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGTGCTCCGTGACTGACACACACAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATGAAGAAATACCAAATCGACCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTATTTATTTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAACTTTTAACAATAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 27641-26771 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIHM010000239.1 Escherichia coli strain B-20 ESC_QB0120AA_AS_NODE_32_length_42493_cv_7.047774, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 27640 28 100.0 32 ............................ ACATCATGAACGCGCAGCAATATGCCGCAATT 27580 28 100.0 32 ............................ CGGCAGAAAAACCGGTCGCGCTAATGGAGAAA 27520 28 100.0 32 ............................ GCCGCAACTCACAATAACAGAATCACAAATTA 27460 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 27400 28 100.0 32 ............................ AGGAAATTTCCGGCGACTAACGAAACAGGTTG 27340 28 100.0 32 ............................ GTCATCGGTATCGTCACGCGCAAGGGATTCAA 27280 28 100.0 32 ............................ GTTGTAATTTTCGTACCCGGCGCGATCGCAAT 27220 28 100.0 32 ............................ AATCGTAGGGCACACCCTTACGGCAGTTAAAA 27160 28 100.0 32 ............................ AATCAGCCCGATCACTGTGCTGCGCCCCGCTC 27100 28 96.4 32 ......................C..... TCATTGGAATACATGAGTTGCGCCCATTTTGT 27040 28 100.0 32 ............................ TGGCATGCAATCACTACAGCTATTAATTTCTA 26980 28 96.4 32 .................T.......... TGAACGCGATCCGGGCGATTCGGGAGTTTTCG 26920 28 100.0 32 ............................ TTCACCGAGTGGGTGCTCGTGCTGAATGAACT 26860 28 92.9 32 ..................C.T....... CACATATACGCGAACGTCATTTTGCAGTAGCA 26800 28 85.7 0 ....................T...C.CT | C,A [26774,26777] ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTGACGGTTGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGGCATTTGGTCATGCCATGACACTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTTCAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCAGCGAATGAAGTGGATGTCGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //