Array 1 452354-454273 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZB01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain NP2113 NODE_1_length_632909_cov_82.064309, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 452354 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 452415 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 452476 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 452537 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 452598 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 452659 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 452720 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 452781 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 452842 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 452903 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 452964 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 453025 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 453086 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 453147 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 453208 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 453269 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 453330 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 453391 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 453452 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 453513 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 453574 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 453635 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 453696 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 453757 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 453818 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 453880 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 453941 29 96.6 32 ..........T.................. GGATATGTGAAGTTCAGGTAGCCCATTACGCA 454002 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 454063 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 454124 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 454185 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 454246 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 470406-472004 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZB01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain NP2113 NODE_1_length_632909_cov_82.064309, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 470406 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 470467 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 470528 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 470589 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 470650 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 470712 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 470773 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 470834 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 470895 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 470956 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 471017 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 471078 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 471139 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 471200 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 471261 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 471323 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGTCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 471426 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 471487 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 471548 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 471609 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 471670 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 471731 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 471792 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 471853 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 471914 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 471975 29 96.6 0 A............................ | A [472001] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //