Array 1 656178-659509 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR778175.1 Candidatus Nitrosacidococcus tergens isolate NSCAC1 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 656178 29 100.0 31 ............................. TGTAAGTATACTAGATGAATGTTTTAAAATA 656238 29 96.6 31 ............................T AAAAAATGAGCATAATTAATGATTTATCTAT 656298 29 100.0 31 ............................. TTTGTAAGTAGCTATTTGTATTATTCATTTT 656358 29 100.0 31 ............................. TCAGGAACGAAATTATTTCAAGGGGGTAAAA 656418 29 100.0 31 ............................. AATCAGAGGCTCTAATGATGACAAACTATCA 656478 29 100.0 31 ............................. ATCTTGATCCGTATGATCGTTTTAGTATTAA 656538 29 100.0 31 ............................. TGCAATAAAATACTTTACTGCAAGCTGTGTT 656598 29 100.0 31 ............................. GTGAACTTTAAGAGACATCGATCGCAATGGT 656658 29 96.6 31 ............................G AATGATAAACGTGCTACGTAAACATTAAATT 656718 29 100.0 31 ............................. TCTCGATAAAAATAATTGATTTTTACCTTCT 656778 29 100.0 31 ............................. TCAGTGCTTTGTAAATATCAAGTATCAAATC 656838 29 96.6 31 ............................G TAACTTCTTAACGCTTTAATCACAGCCGAAA 656898 29 100.0 31 ............................. AATACTACACAGACTGTATTACAACAAATCT 656958 29 100.0 31 ............................. CAAACATTAGAAGAATATGAGTGGAAGGGAG 657018 29 96.6 31 ............................T AACCTTGATCCGTACGATCGTTTTAGTATTA 657078 29 100.0 31 ............................. GATAATCCATGTATCAACCCAACACCAACAT 657138 29 100.0 31 ............................. ATAACATTCTTTCTTTGCAAAGATGAATGAG 657198 29 100.0 31 ............................. TATATAAATGACCTGTAGGTAATATAGGTAT 657258 29 100.0 31 ............................. TCCCGCCAAATCATCTTCATATAATCGTTGC 657318 29 96.6 31 ............................T GTACATGATGTGTTAAGACAATGGAGAAGCT 657378 29 96.6 32 ............................T GTTATAAAATTTCCCTTTATCTTCTGCTTCAT 657439 29 100.0 31 ............................. TTGGCTTTAGTAGGACAGATAATTGACTTGA 657499 29 96.6 31 ............................T CAAGCAATTAAAGACATGGGTAGAAGAGTGT 657559 29 100.0 31 ............................. AGTACATTTTCTGCTTTAAGTGCTAATGTTG 657619 29 96.6 31 ............................T TTTAGATGTTGACTATCTGATACACCTCTAG 657679 29 96.6 31 ............................T CACAACGATAACCTGACAATACCACTACCTT 657739 29 96.6 31 ............................T ATTTCAGGAATACTCATGTGTACTCCCCCGT 657799 29 96.6 31 ............................T ATAGCGAGGGAAGTGTAACTGTACACGATCC 657859 29 96.6 31 ............................C ATTCTTTATTTTTTTAATTAATTTCATTTCG 657919 29 100.0 31 ............................. CCATAATACTCAGCTATTAATTGATCATATT 657979 29 100.0 31 ............................. CTTCACCTGAATCTTCTAAGATTCCTTGCAT 658039 29 96.6 31 ............................T CTAACCTGTTTATTTAGCTCCTCACAACGAT 658099 29 96.6 31 ............................T TTAATGGTGTCATCTACATAGGTACCATAAC 658159 29 96.6 31 ............................T TGGTTAAAAACAGTAGATGCAGATACTCTTG 658219 29 96.6 31 ............................T TTCAGATGCTGGCTATCTGATACACCTCTAA 658279 29 100.0 31 ............................. ACAAGAATTCTAATATTCTCTGGTCAATCAA 658339 29 96.6 31 ............................T CAGAGAGACGGCACTTACAAACATGGAGGAA 658399 29 100.0 31 ............................. AGAAAGTTTACTTCACTGCTTCTTCTAACAA 658459 29 96.6 32 ............................T TACTTTCTTAAAGAGATAGAAGAATACCACCC 658520 29 100.0 31 ............................. GTCGGCCCACTTAAAGACGCTAGTGATTGGT 658580 29 96.6 31 ............................G ATAATTATAAACAGCTGGTATCGTTCTTCTC 658640 29 96.6 31 ............................G TAAAATACGATAATACTCCGAGTAATGACAC 658700 29 96.6 31 ............................G CGTCAAAATCTAAATTACCCATTATTTGTAT 658760 29 96.6 31 ............................T GCATGATCAGGTGGCAATATTCTATCTCTTA 658820 29 100.0 31 ............................. TCAAATGTACATCTCAAATCTTCAGCGTTAT 658880 29 96.6 31 ............................T ACAGTGCCCATCCCTATTCCTCTGCATATAG 658940 29 100.0 31 ............................. CTAACAACATTTATTCTAAGTTGTGCATTGA 659000 29 96.6 31 ............................G CTCGGTGAGACAGTAGTTATTCAAAAATCAC 659060 29 100.0 31 ............................. TATACACAATGGATAGTCAAAAGCATTTTAC 659120 29 100.0 31 ............................. CAACTCATGCAGATGGTACTCGTGTAATATT 659180 29 96.6 31 ............................T GCACTTATAAAGCCTTGATGTATTGTTTCTG 659240 29 96.6 32 ............................T ATCCTGAATAATACTCATAAGTTAATACTGTA 659301 29 100.0 31 ............................. TTGTCTTAAAACATCGTGTACTGGTATGTCA 659361 29 96.6 31 ............................T GTATCCAGCGTACATCAAATTTTGTAAAGAA 659421 29 96.6 31 ............................T GTAGCTCTTACTCTTTTATCTCCGCTCTCTA 659481 29 93.1 0 .............C..........A.... | ========== ====== ====== ====== ============================= ================================ ================== 56 29 98.2 31 GTTCACCGCCGAATAGGCGGTTTAGAAAA # Left flank : AGCGTACCTAAAGATCATGACAAAATAGCCTATCGCCGATTACGAGAGCCAGAAAAAGCAATCAATGGATTTAAAAAACGGCTTAGTCTTCGTAATCAGAAAAGGGAGAGCATACCTCATTTAAAAAACAACACAAATGAAACCGAAGAAAAGGAGAAAATAAAACGACCACCCTATTTAATTTTAGAACGTAACGGGCAGAAACTACCAATTCATATTGGCACGGAAAGGCTAAAACTTGATTCAGATCTTTGCCAATTTAATACCTATGGATTTGCAAAAAAGATAAAAGAGTGCTATGCAGCGATTCCTTTCTTTTAAACCTTCCTATTTTGAGATATTTTTTATTTACAATAAAAACAATAACTTGTAATTTATGCTAAAAAAGGAAGGTTTTTTATTAAAATTTAAGTATACTGAGCTTGCTTTTAAAACGAATCCCACGATAAAAAGTGGGATTGTGCTCGGCTAGCTTTAAAGGATCTTTAACAATTTTTACT # Right flank : ATCAGAGCCCACAGAAACCAAACCCACTTTGTATTATCTCCGAATAAGTAATTTAGAGAATCCAATAAGAGATATTTAATCTAAATATTTGTATAATCACTGGTTAATTATTTACTATTTTACTTAAAAAAATAAATATACATAGCATTGTAATGAAGAAACTGCTCTTTATACCTATCCTCTTTATTCATATTCAAGCAAAAGCATGGGTTGACAATCTCGCTAATGACTCTATGGAAGGCTATCCCATCTATTCTATAGGGGTAATGAGTGAAGATGGGGATGAGGAACTTATTTTTGATTGTAGTAAAAATGGGGTAGAAAGCACTTTATTGCTCAATCAAGATATTACCGTAATCTATACAAGCTATCTTGCCTATGATGCTTATGCAGGGTTTTATGATGGAAAGAAGCCTGAATTATATCGGGATATTATCTATCGAATTGATAACAATCGTGTAGAGAGGACAGGAAGTGATGTAGTTCGCCACGATGTAGGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGAATAGGCGGTTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //