Array 1 1411343-1408079 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033904.1 Trueperella pyogenes strain TP3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1411342 29 96.6 33 ............................A CATGTGGCACCACCAACCTCCACTGGCGCCACA 1411280 29 96.6 32 ............................G TGGCGTATTCGTATAGGCCGACGATTTGTAGG 1411219 29 96.6 32 ............................T TACCCATTTGGCGAGCTGGCCGCGGTCTGTGG 1411158 29 100.0 32 ............................. ATTGGTGACGCGGACAGTGCGCCCCACAGTAG 1411097 29 96.6 32 ............................G CCCAATCTGCTTACCCGCACCAGCCAGACGCA 1411036 29 100.0 32 ............................. CAACCTACCCTACCGGGACACCCACGAAACAT 1410975 29 100.0 32 ............................. ATTTTTGAGGTCAGCAGGAGCAACAAAATCAG 1410914 29 96.6 32 ............................G TAGTTTTGCCATCCGGATCATTGGCAAAAAGG 1410853 29 96.6 32 ............................T AATTGGTGCTCGTCGGAGATGTAGCGCGTGAT 1410792 29 96.6 32 ............................G GTCTCGAAGGTGGTGCTGTACGCGGTCGGCTT 1410731 29 100.0 32 ............................. CAATCCCGATGCCTGCGGGCTGGAAACAAGAC 1410670 29 96.6 32 ............................G CCCCAGTAGGTGAAGCGGCTGAGTCGGCACGT 1410609 29 96.6 32 ............................G CCCGTACTGCTTTGATGGCATGCCGTTCGCGT 1410548 29 96.6 32 ............................G TAGAAAGATCCTTGGCCGTAGAGAAGTCGGTG 1410487 29 100.0 32 ............................. ACGCCGGCGCCTCACGCCGTGCCGACATCGGC 1410426 29 100.0 32 ............................. ACGGTTCTTCTCCTTGCCAGTAGGCTTCGTAC 1410365 29 100.0 32 ............................. CCCGTACACCAAGTTCGCGGCCTACGCCCTCT 1410304 29 96.6 32 ............................G TCTGTTACATGGGTTGCGGCGTATTCGCTTGC 1410243 29 100.0 32 ............................. GCCTTGGTGGATGCCGGGATTTCCCTAGGTGG 1410182 29 100.0 32 ............................. TGCTCGACGTCAGCGCGGATATTTACCGCGAT 1410121 29 100.0 32 ............................. GATCATTCAGCGTTAATGTGGCAGCCAGGGTG 1410060 29 100.0 32 ............................. CGCGTGGGCGGGTTCAACCGTTCCAGAGGCTT 1409999 29 100.0 32 ............................. AATGACCACGACGATCGGGTTACAACCTACAA 1409938 29 100.0 32 ............................. CTGCCCAACGGGCAAACCCGTGACGTGTACGC 1409877 29 96.6 32 ............................T GATGAGCTTGCCCTTTACGTGTGGCTGCTCCT 1409816 29 100.0 32 ............................. TCGTCTAGGGTGAAAACCCCTGCCTTCGCAGG 1409755 29 96.6 32 ............................G GAGGGAAAGATGGACCTTTCGGAATGCGTCGC 1409694 29 100.0 32 ............................. CGCGCTCGGCGCGCTCGTTACCGTTCTCACCG 1409633 29 100.0 32 ............................. AGCGCCCAGCCCACCGACCACACGCCGGAAAC 1409572 29 96.6 32 ............................G ACATGGTTTTGCACGGTGGTCGGCATGGTATC 1409511 29 96.6 32 ............................G CTTGGCTCCTCGCGCCAGAGCATGCATCACAA 1409450 29 100.0 32 ............................. CGCGAATGAAAACCACGATACGTACCCTCGCT 1409389 29 96.6 32 ............................G CCGAAAAGGAGCCGCCCGGCTGGCAAGACCAC 1409328 29 96.6 32 ............................G TCAAAGGGGCGTTCTCCGCCAATAACCCGTCA 1409267 29 100.0 32 ............................. CGGTAGTGGCCGGGCAGGCTCACGCCGACCCG 1409206 29 100.0 32 ............................. AGTGCCACGCACTACACGGCCGCCACCATCGA 1409145 29 100.0 32 ............................. GCGACCTTGATCCCGCCACCCGAATAGGACAG 1409084 29 93.1 32 ........T...................G CACGAGGGGTTTAGGAACGCTGTCAATACAGC 1409023 29 96.6 32 ............................T GGCACAATTTGGCCACGGTTGAGCACACCGGC 1408962 29 96.6 32 ............................G CGTGTGACGGCACAGATCAAGGCCGATACCGG 1408901 29 96.6 32 ............................T TTTGGGTATGGTGGCCGCCAGTGGGCGGAGTT 1408840 29 96.6 32 ............................G AGCACGACGTCCTATATCTGATCACCGAATAA 1408779 29 96.6 32 ............................G CCATGCCGGGTATCGTGACGGTGGTGGATGAC 1408718 29 100.0 32 ............................. GTCATCTCGCATATCGAGGCGACGAACCACGA 1408657 29 96.6 32 ............................G TTCGCGGATCTTACGAGCGGTTTGCGTATGTC 1408596 29 96.6 32 ............................T TCCACCGAAGAGAGTCCCACACGGCGAGGTCT 1408535 29 100.0 32 ............................. GGGATCGAGCAGACGATTACCGCGACCGGCGT 1408474 29 96.6 32 ............................G CCGGGCCTGCAGTGGTGGCGCGATATAACCGG 1408413 29 100.0 32 ............................. GGTTTCTACCCACGTTTTAACTACTTCAAGTG 1408352 29 100.0 32 ............................. ACGCACATGTGTGAAATGTAGCGGCGGGCGTG 1408291 29 93.1 32 .............G..............G CCTCATACAATGCGCCGATCCTGCCTTTCAGT 1408230 29 96.6 32 ............................G ACGCGGGAAAGCTCTTGGCCTCGTGGCCTGGT 1408169 29 96.6 32 ..T.......................... GCACACGTGTCGTAAGTGTCGCGGGTCGCGCA 1408108 29 93.1 0 ..........................T.A | C [1408083] ========== ====== ====== ====== ============================= ================================= ================== 54 29 97.9 32 GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : CCGCGGTACCTGCAGGTCTGCGGGGCGACCTCACGAAATGGCTTATGGAGATCGCACCAGGAGTGTTTGTGGGGACTCCAAGCGCGCGGATACGGGAGCAGATCTGGGCACGCACCGTCGCACTTTGTAAAGACGGCCGGGCAATCATGGTTTGCTCCGCGGATAACGAGCAGGGAATGACGTTTCGAACCCATCGACACGATTGGGAACCCGCAGACTTTGATGGTTTGACCTTAATGATTCGGCCAGATGGTGGACAGAATTCTCAGAACAATCAGCGAAGAACGGGATGGTCGGACGCTAGGCATCTACGCAAAAAGTATTGATAACGACTGAACTGTTTGGGTGTCCAGATTTTTGATAGTTCGAGAATTGTGGATTACGCGCGATGGTAGTGGATAGAGTGGATCCTGAAACATCCATTGGGCCATTGTCAGGTAGGCCGCAATAAGTTAAATGTATAATCGAAGTGCTGGCGGCAGAAGTGCTGGTCAGCAACT # Right flank : GTGACGGTTGGAAAGTAGCCCAGTAGTTGCGTCGTTGATTTTGAGAATCACGCGCAAAATGCGAAACTGCACTTCTTCTAAAACCTGCAAACTCGTACACGGCGTCGCGTCCTCCTCGGGTGCCCTCACAATCGCCAGGCGCCAAATCAAGTAGGCCATTGTCAGCTACTAGGAATCTGACAAACGAGAATCAATATCCATATGACGCTGGAGAATTCGTACGACTACCACGGCGTCGTCTTCGCACCGATAGAAGATAACGTGTTGACTGCCTGTCAGGCTGCGGCAAGCTGATTCAAGTTCTTTGCGGAGGCGGTCGCGCAGAGGAAAATCTGTCAAGCTCTCTAAGCTAGTCTGGAGTTCTCGCAGATACAGCTCCGCCTGGCAGGGTCCCCATTTTTCTTCCGTATGATCCCTGATATTTGACAGGTCAACCTTGGCTAGTGGTGAGAAAGCGAGTTTCACTGGTGCTGCTTTTCTATGATGAATTAGTCAAAGTC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //