Array 1 1012255-1014593 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBZA010000001.1 Actinopolymorpha cephalotaxi strain DSM 45117 Ga0374025_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 1012255 29 100.0 32 ............................. GACTCTGAACGCCACCAAGGCAGCCAGGAACC 1012316 29 100.0 32 ............................. TGCTGCCGCGACACCATCGACGCCTCGTCGAT 1012377 29 100.0 32 ............................. TCGCTCGGCAAAGTGCTGGACCGGCTGCGGCT 1012438 29 100.0 32 ............................. CCACGGCTGGAACACCTTGGCGGCCACCACGA 1012499 29 100.0 32 ............................. GCGACCCGGCCGATCTGGAACGAGTGGTAGAC 1012560 29 100.0 32 ............................. CTCTTCGCCCCTGTCGACAGGGCCGCGACGGC 1012621 29 100.0 32 ............................. CGCGGCGGGCCGGTGTCACTGCGTCGGAGATC 1012682 29 100.0 32 ............................. GCCGATCACTACGGCCGCGCAGGCGGGCCACT 1012743 29 100.0 32 ............................. TTCTGGACCCAGACGACATCGAAAGCGCCGAT 1012804 29 100.0 33 ............................. GTGAACCCGAACCCGGGGCCTGATCGTCAAGGG 1012866 29 100.0 32 ............................. ATCGGCGGCGAGGGCCTGACCGGCCAGCGCGC 1012927 29 100.0 31 ............................. GGCGTGGGTAGGGGCGGATCCGGCCGCGCCT T [1012955] 1012988 29 100.0 32 ............................. CGCGCTCGGCCAACTGGATACGGATGCAAGGG 1013049 29 100.0 32 ............................. AAGCGGACCACGGCGGCGACGCCGCGGGAGAC 1013110 29 100.0 32 ............................. CTCCGCGGGATCAAAGATCCGGTGAAGCGGTC 1013171 29 100.0 33 ............................. AACCGGTACGGCGGCGTCTACTGGCCCGAGGCG 1013233 29 100.0 32 ............................. AGATAGACCCCCTGCAGGGTGCCACCGCGCCC 1013294 29 100.0 32 ............................. CTCATGCACGGCGAAGAGATCGACGTCCCAGA 1013355 29 100.0 32 ............................. ACTCGGAACGTCCGCGGTGGGTTCGTACTTCG 1013416 29 100.0 32 ............................. TAGTGGGTACCGCGGACGACGAGGCCGAGGCA 1013477 29 100.0 33 ............................. AGCATCTGCCGGTTGGCGTCGCCCTTCTTGGTG 1013539 29 96.6 32 .................A........... AGCGGGACGAACCACTGGCACCCCGCGCACCA 1013600 29 100.0 9 ............................. GGTGCGCTC Deletion [1013638] 1013638 29 86.2 32 .AC..GG...................... TCGCCTGACCAGACACCGGCCGTACGGGATCC 1013699 29 100.0 32 ............................. CCGGCGCCGACGTCGGACAGCGTGCCCGAGCC 1013760 29 100.0 32 ............................. GGATACGTACGCGCCTTCCACGGCGAGTGGGA 1013821 29 96.6 32 ............................T CGGCGCTGTCGTGGTGGCAGGCCGGACCCGGA 1013882 29 100.0 32 ............................. GGTGAAATCCGAAGGACGCGAAGCGCCCTTGA 1013943 29 100.0 32 ............................. GACCTGATGCTCTGCGGCGAAATGTTCGGCCT 1014004 29 96.6 32 .....T....................... TCCGCGGTCGAGCGAATCGAGCGGCAGGCAGC 1014065 29 100.0 32 ............................. CCGGAAATGTCGATCGGCGCCGCGCTCGCGGT 1014126 29 100.0 32 ............................. CACGAGGGCCAGTTCATCCTCAACGACTGGAC 1014187 29 100.0 32 ............................. GTCGAACACCAACTGGAGAAGGACTCCGCCGA 1014248 29 100.0 31 ............................. GGCCATGACGGCGCTACAACGGCCGGCCACG T [1014276] 1014309 28 96.6 32 .................-........... ATTAAGCCGGTTGGCGTTGTGCTCCACACCGA 1014369 29 93.1 32 ..............A....T......... GACGGCAAGCCGCGCTGGCAGTGGAACGTCAC 1014430 29 89.7 47 .......T...A................T GCGCAGTGGTACGCCGCGGCGTTCGAGGCGGCGTGCACCCGCATCGA 1014506 27 93.1 32 ........--................... GCGTTCGCGGTGCCGCTGGTGCCGCCCGAAGT 1014565 29 82.8 0 ...T.............C....C.G..T. | ========== ====== ====== ====== ============================= =============================================== ================== 39 29 98.2 32 GTGCTCCCCGCGTACGCGGGGGTGATCCG # Left flank : GTCTCGATCAGCTCCACCACCCCATCCGGGGTCTGGGACGGGGAGGAATGCGGCGCGGAGGACCGGTCGAGCAGACCGGCGTCGCCGCTGGCCCGGTAGCGGTTCACCCACTTCGACAGACACTGCCGCGACACGCCGGCCTCGGCGGCCACGTGGGCGATCGGGCGGGTCTGGCAGCGGGTGACAAGACGCAGCCGGCCGGCAGCAGTCAACGGGGCGCTAGCGTGGGACACGAGGGGTAGATCCCTTTCGGAGGACGGTTGGTCGCACTTCCATCCTGCCGACCGGCGATCTACCCCTCCCTCACACCCCGACCACCGTCAACAACCTCATGAGCCACAACATCTAGCCCAGGCCGACGTCGCATCCGCGAAGCAGGGCGTCAGGGAGCATCCCGCTAAGCGAGACCGCGCGACGATCGGTTGCCTGGGCCCTGGCTGCGGTCGACTAAAGTGAATGAGAACTTGCTGCGTCAGCTGCAAAGCTGCAGGTCAACAAGT # Right flank : GCGGACGGCGCCGGGGTTGATGCGCATTTCCCATCCTCGAGGGATCGGCTCTGACTGACCCGGTGTGACGACGAGATGCGTAGCAGTCCGTAGTCTTTTCGCCTGTAGCTGACGGCGCGAAGTAACCGGAGTGATCGAAAAGCAGGATGGTTGTCGGTGCCGTCGTGTTAGATGACGCCCGTGCACTTGAACACGGGGAAAGTGCCGGTCGGACCGGCTGCAAGTGTCTGGGCGAAGTCGAAGCGAGATGATGGCAGCTGGCTGGCGTTGTGGCGTCACCTGGACGATAGCGCCGCGGTTGCTGGTCGGCTGTGGGATGAGTGGCTGCCGCGTGCGGTCAAGCAGGTCATCAGTGCCGGCCTCCCAGCGGGGGAGGAGGACGGCCGCGTCCTGGCAGTGTGGCTGGCTGGGATTCATGACGTGGGGAAGGCAACCCCGGCGTTCTCGATCCAGGTCGAGCACTTGGCCGATCGGATGCGCGACCACGGCTTGGCTATGAG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTACGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCTACGCGGGGGTGAGTCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1024666-1026343 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBZA010000001.1 Actinopolymorpha cephalotaxi strain DSM 45117 Ga0374025_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1024666 29 100.0 32 ............................. TCGTTCGCGCCCAGTTCGATCAGGAAACACGA 1024727 29 100.0 32 ............................. ATCGCCGCCATGAAGGAAACCCTGTCCACCCT 1024788 29 100.0 32 ............................. CCGAAGAGTCGGACGTAGTCCTGGCGCCGGTT 1024849 29 100.0 32 ............................. AACGACTGCCAGGCCCGGCACGAGATCGAAGC 1024910 29 100.0 32 ............................. TACCGCGGCAAGGGAAGCACCACCGGAAACGC 1024971 29 96.6 32 ............................C TCCAACCGGAACACCGCGGCGTTAGAGAGGTT 1025032 29 100.0 32 ............................. TTCAGGCACGCCGACCAGGTGTCGCCGCTGAC 1025093 29 100.0 32 ............................. TTGAACCGCGCCCATCCCGCCCGCCCCGGGAG 1025154 29 100.0 32 ............................. CTCCCGCGTAACCCCGTCACCCCGCAGAGCAG 1025215 29 100.0 32 ............................. TCGTAGTCCTGGATAGCGGTCATGGAGAGCCC 1025276 29 100.0 32 ............................. GCTGGCGCTGTCCTGCTCCGACAGCGCGGCCT 1025337 29 100.0 32 ............................. ATCACGGGGCATCACGTGCTGCGCCACTGCTA 1025398 29 100.0 33 ............................. AAGGCCTGCGGGTCGGTGCCGCCGTTGCCGAGC 1025460 29 100.0 32 ............................. GACCGCGACATGGTGGACACCCTGGAGACGGG 1025521 29 100.0 32 ............................. TGCCATGCGGGTGCCCTCCTGGGGCTGGGAGA 1025582 29 96.6 32 ............................T GACAGCGCCCCGAGTGCGCCCAACGCGCTGAC 1025643 29 100.0 32 ............................. CGCCGGCGGTGCGCACAGTGACGTTCGGGAAC 1025704 29 100.0 32 ............................. GTCTTGTTCTTCTCGAACAGCAGGATCAGGCC 1025765 29 100.0 32 ............................. AACTGGGACCGCCTGTCCGACGCAGTGCGCCG 1025826 29 100.0 32 ............................. GCCGATCACCTCGGCCGCGCGGGCGGTCACTC 1025887 29 100.0 32 ............................. CGCCGAGCCTCTCGGCGTCAGGCGCCTCGACC 1025948 29 100.0 32 ............................. CCGCAGAGGCCGCCGAGGTCGCCAAAGCGCAC 1026009 29 100.0 32 ............................. GATCCGCCGGTCGCACCGGCGCCCGTGGTCGC 1026070 29 100.0 32 ............................. GCCTGCTACCGGTGGAACCCTTACGACCTCGG 1026131 29 100.0 32 ............................. TTGTTGCGTTCCCGCCGACGCTCGAGCTCTGC 1026192 29 100.0 32 ............................. GACCCGATGTGGGGGCAGGAAGTCGCCAAGCC 1026253 29 100.0 33 ............................. TCGTGGTCGTCCCACACGTAGGCCAGCGGCGCC 1026315 29 93.1 0 ..............T.T............ | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.5 32 GTGCTCCCCGCGTACGCGGGGGTGATCCG # Left flank : GATCGAGGGCGGTACAAACTACGCGTACGAATCCGACGACGAGGTCGACTTCTGATGACCGTCATCGTCCTGACAGCCTGCCCTGCAGGCCTTCGCGGCCACCTCACGCGGTGGCTTCTTGAGATCTCCGCCGGCGTCTTCGTCGGCAACGTGACGTCCAGAGTCCGTGACCTCATGTGGGCACGCGTCATCGAGCTATCCGGGCAAGGTCGAGCGCTGATGGTGTACAGCACCGACGGCGAGCAACGGCTCCAGTTCAAGGTCCACGAACATCATTGGAAACCCGTCGACTACGACGGTGTCATGCTCATCCGCCGCCCGCCCAGTCACGACTTGGCGTCACCGTCGAGTGGCCGGACCGGCTGGAGCAAGGCAGTTAAACGGAAGCGCTTCGGAAAGCAGGCAGCCCGTCGCACCAGCACACCCCCATCTCCAGGGAAGGGGCCCTGAAAGTGATTGAGAATCGCCACGAGCCATAGCAAACCCGCAGGTCAAGAAGT # Right flank : GTGACCCTTTGGACTTGGACGCAATTGACGCTATTGCCAGAAACGGCCGACGCCGTTGGCTCCGGCCTGTTCCGCCGAGGTTAATCTGGCAGTTGGGTCCAATGCCACCCCGCCCTCACCCTCGGCCTGGCGCTCCAACCCGACGTACTCCGCGAGATCGCCAACATCCCGGGCGGCCGCGGGAAAGGCCTCCTCGGCCGCATCCTCTACGCCCTCCCCGAGGACCTGGTAGGCCGCCGACAGATCGGCCCACCACCCGTACCCGCCGACGTCGCCGAGGCCTACGAAACCAACCTCGCCGCGCTGACCCGCTCCCTGGCCGACTGGACCGATCCCGCCGTACTCACCCTCACCCCCGAAGCCGGCGAGCTCGTCCTGGCCCTGGAGGCCGAGACCGAACCCAAGCTCGCCGCCGGCGCCGAGTGGAGCCACGCCCGCGACTGGTACGGCAAATGGGTCGGCGCCACCGCCCGCATCGCCGGCCTCATCCACCTCGCCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTACGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCTACGCGGGGGTGAGTCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //