Array 1 34503-32216 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCSZ02000031.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0360 NODE_31_length_43662_cov_10.588262, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34502 29 100.0 32 ............................. GGAACTGGTCAGCGGCGAAACAAAATCCGTGA 34441 29 100.0 32 ............................. CTATCGGCAATTTTCATCAGGCCCATTGCAAT 34380 29 100.0 32 ............................. GCGTCCAGCATTGCGCTAATAAAACTGGCCTG 34319 29 100.0 32 ............................. CCGGTCATAACAAGTGGCTTCGACGACCCTTT 34258 29 100.0 32 ............................. ATTGACGATTTTTCGTTAATAACGTCGTTATC 34197 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 34136 29 100.0 32 ............................. CCCTCGCGCAAAAAGCGGTTGCTGTCGTTGAC 34075 29 100.0 32 ............................. AATCTGCCAACAGGCGCTCTGTGTATCGGCGC 34014 29 100.0 32 ............................. CTCCCTCTCCGCGTTTTTGCGTCGGCTGGGGA 33953 29 96.6 32 ............................T TTACGAGTTGGACGGTGAGTTTTATCACCGCA 33892 29 100.0 32 ............................. ATCCGCAGCATTACGTTGACGAACAAGCGAGA 33831 29 100.0 32 ............................. TTTCCATTTTAACACCTGCTTAATTAAGAGAT 33770 29 100.0 32 ............................. AGATTTTGCAGTGAACCACGACCGATGACGGA 33709 29 100.0 32 ............................. GCGTGTAAAATCACAGGCCGTCAGCCTAACGA 33648 29 100.0 32 ............................. CTGTCGCAAAAGCGGGTCTTATGTCTGCGGGT 33587 29 100.0 32 ............................. CCCCTGAGCGTTCAACGGCAAATAGCGGACAC 33526 29 100.0 32 ............................. TATACAGGGCGTTACCCCCAATCGAGCAGCGC 33465 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 33404 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 33343 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 33282 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 33221 29 100.0 32 ............................. GGTTCACTCAGTGGAGCCTTCCACCTGATAAG 33160 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 33099 29 96.6 32 .............T............... AATTCCGTTACTATCTCGACGACCCGCGCGCG 33038 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 32977 29 100.0 32 ............................. AAAGCGAACGATGCGCTGAAAACGACAAAACA 32916 29 100.0 32 ............................. CAGTGAAATAAAACCAACGCACTGGGTATCCC 32855 29 96.6 32 .......T..................... CCCACCGCCCAGCCCGGATATAGTGAACTGGT 32794 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 32733 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 32672 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 32611 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 32550 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 32489 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 32428 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 32367 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 32306 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 32245 29 96.6 0 ............T................ | A [32218] ========== ====== ====== ====== ============================= ================================ ================== 38 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGGGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7946-7307 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCSZ02000113.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0360 NODE_113_length_13267_cov_10.906393, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7945 29 100.0 32 ............................. AGCACCTCGGGGACGATATTATTGGGACTATA 7884 29 96.6 32 A............................ GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 7823 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 7762 29 100.0 33 ............................. TGCCGCGTGTCCGCCCCGTTGTCCAGCATCTGC 7700 29 100.0 32 ............................. AGTTGAGTAAAAAATCATGACATCACGCTACA 7639 29 100.0 32 ............................. CCGCGCTTATTGATCAGGAGAAAATAAAAAAA 7578 29 100.0 32 ............................. GGTCCGGTGTGGTCTGCCGAACCCGGCACCAG 7517 29 96.6 32 .................G........... ATGATGCGCAATTGCCGCCGTCGTCGTTGAGT 7456 29 96.6 32 .................G........... GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 7395 29 96.6 32 .................G........... TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 7334 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCCGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAATTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCCGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //