Array 1 171982-172937 **** Predicted by CRISPRDetect 2.4 *** >NZ_PENG01000002.1 Prevotella intermedia strain KCOM 2832 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 171982 36 100.0 30 .................................... TTTTCTATATATATTGTCGTTCTCTTCAAA 172048 36 100.0 30 .................................... TGCTGCCATTGCCAACAAGTCGCTGGTCAG 172114 36 100.0 30 .................................... GACAGCACCACAGCAAGCTATCGACTTAGT 172180 36 100.0 30 .................................... ACTTTGCCCTCAATTCCTGCATTGTCTTTT 172246 36 100.0 29 .................................... GAAGTTGTCCAAAGCCCTCGCTACAATTG 172311 36 100.0 30 .................................... TATATTTTTTGTTCACTCAATTAGTATTTT 172377 36 100.0 29 .................................... TGCAAGGTTGTATTCTTTTTCCATACCTG 172442 36 100.0 29 .................................... TGTAGTACCAACAGTAAAGCACGCCTTGT 172507 36 100.0 30 .................................... CTCTTGCGTTCATATATTTTTACTCTTTTT 172573 36 100.0 30 .................................... GTGAGGAAAGGTATGTTTTGAAGGGTTGTG 172639 36 100.0 30 .................................... ACCCCTCTAAGCTGCCAAATGTCCAAATCT 172705 36 100.0 30 .................................... CCTTTATTATTGAGGTGTCAAAGTAGATGT 172771 36 97.2 30 .........A.......................... AATAGCGAGTGGCGATACGCAATTGCAGGC 172837 36 97.2 29 .........A.......................... ATCTTCTTCGTAACTGTCATAACTTGCCG 172902 36 94.4 0 ..........................C.C....... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.3 30 GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Left flank : ACGAAATGCCTTTTCGCACAACCAATATCCAATGTACAATGAAAATCTCTTCGGAAATATTGAGCGGTTCAGCCTTTCTTCTTCTAATATTATAGAAAGTAAGGGGCTCGATATTGCTGCAAAACTGAAAGAGGAAGTTAGTAAGGCAACAAAAAAAATACAGAACGAGGAAGACGACAAAAAAGAAAAAGAAACTTAAAAACAAGATTATGGATAGTTCACTAATATAAAAAGGGGGCAATGTTGCTGATGTTGAATACAGCAAGCACGTCTATATGCTGTTGCTTACTGCGAAGGACAAGCCCGACGAAACGATAGAAATAAAGAATGAAAAGCTTGCAAAGAGAATGATAGAAATTCATCAGAGCCTCTCAATACAAATCAGAAAAGATATAAATTTAAAACAACGAGATTTACAATTCGATAGTTAGAATGCGTAAAATGGGTGGTAAAAAGAAAGGAACAAAACATTATAAGAATCAGACAGTTAGGTTAGGTGC # Right flank : CTTATTAACAAGCAAGGGAATGGAATTGGGGGAGTAGAAAATGGAAGGGGAAATACGCCTTTTAAGGGGTGAAAAAAGGCGAGAAAGGTGTAAATATTTTTCACAAGCAAAACTATTGCGCAACTATCTCGTTATCAGCGCATTGTAAAACCTATTGTTTTGCAATGTAAAAGCGTAGGTTTTACACGGTAAAAGCGGCTCTTTTGCGTTGCAAAAGAGCCGCTTTTGGAATGTAAAATCGAAATTATGGTTTTTCTATGGAATTATCTTTACAAAATAGGAGTGGTTTTACGTCGTGGAAAGTGTAGAGGTTGTGGCGTGGCTTCGGACGGCAGCACAATGGCGGCTTTGCCGATAGTGCGACATTGGCAAGGGTGGTTGGGGCTTCTGCATCGGCTTGATGCGGTGGTTCGTTCGGTTCGGTTGGCTTCGGTTGATGTGCAACGACGACAGGAAAGCCGCTGTACAGAGCAAGATAAGATGCTTTCTCATATCGTTAT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 2064763-2065884 **** Predicted by CRISPRDetect 2.4 *** >NZ_PENG01000001.1 Prevotella intermedia strain KCOM 2832 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 2064763 47 100.0 30 ............................................... GTCCTAATTCTTGGTTCTGCCACACGTGGC 2064840 47 100.0 30 ............................................... TTTCAGCCCATAAATAAGTATTCGTTGCTC 2064917 47 100.0 30 ............................................... AAAGGTTTTTATTCGTGGCAGGCTCGAAGT 2064994 47 100.0 30 ............................................... TCGGCTTTCTTGCCTTTGAACAAAAAGGCG 2065071 47 100.0 30 ............................................... ATTTACAAATTGATAGTTAAACACTGGGTT 2065148 47 100.0 29 ............................................... ACAAATACCAACGTTGCCACAAAGGCTAA 2065224 47 100.0 30 ............................................... CAAGGTTACGCTTTGAAATATGGAAAAATA 2065301 47 100.0 30 ............................................... CGAGGCAGGTTGTTGATATGCAGCAGTCAG 2065378 47 100.0 30 ............................................... TTGAAGAACGCAAGAACGAACGTGAAGAGA 2065455 47 100.0 29 ............................................... TAAAGCAGGGAAAAGGCGAGGAGCAAGAG 2065531 47 100.0 29 ............................................... TTGTTTTGTAGTCGCTTATGCTCTCGTTT 2065607 47 100.0 30 ............................................... CCCCATACAATTCAACTGTTTGCATCAAGG 2065684 47 100.0 30 ............................................... ACTGTGCGTTTTAGGATATTTGCCACTTTT 2065761 47 100.0 30 ............................................... TAACTTGCTGTCAAGTACTTTTATCATTCC 2065838 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 15 47 100.0 30 GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTAGTAAATACAAC # Left flank : GTGTTTTATTTTCAGTGGTTGCATACCTTCATTCTTTAAAGTTTGAATATTTGTTAAAAAGACTCCGAGGTTGTTAAAATCCAGAGCCTCAACTTCGGAATTACGGGCACTTTTCTGCACTTCAAATTATTTATTTGCAAATAACGCCATTATTTGCGTGCTACCATAAGTACTTCGTTCATAGCTTCTTGCAAGCTTATAGGGTAGTGTTGTGCAATGAAACCATACCTTTTACATCGCAAAACGAACACTTTTCTTCCTATATAGGCTATATTTTGCGCTTTATCATTATCTTTTCGCTCTGCAAAAGTGCCGTTCTTGCAATCCAAAAGAGCCGCTTTTGCACGGTAAAACCTATTCTTTTGCATTGCAAAAGCGGCTCTTTCACTTTTCAACCCCTATTTTCCTGCTCTCTTTTTCTCTATTTCACCCTTTCCGCTTGTGTTAAATTTATTGCCCCATTTACTTGATTTTAGAACAATAAATCGGAAGTGTCGTTA # Right flank : CTCAAATGGATTAAAGTGATGAACATCAGTGTTGTTACGAAAGATTAGAGAGAAAGAAAAATGCAAGCAAAATAAAGTTCCACTCGTTAAGAATGGAACTTTATTGTTTCTAGAAGAAGGATTAAAAGAGCTCTAATTGTGCTCCAGGTGCATTTGGTTTTTGTGGTTTCTTACCATAGAATAGCTTTATTTCTTCAAATTGTTTGTCTGTAATGCCCATTATTCCAACTTTTCCGTATGCAGGAATAAAGGTGGAAACTCTTTTAATGTGTACTTCCATATTTTCTTTACTACCACAGTGGCGTATATAAATGGAGAACTGAAACATTGTAAATCCATCTTTCAGCAAGTTTTGACGAAAGAGTGAAGCTGCTTTTCGTTCTTTCTTTGTATCTGTGGGTAAATCAAAAAATACCATTAACCACATACTTCTGTATTGACTAAATCTATAAGTTTCCACTAATAGGCTTTATAATTCAGGATAAACCATTCTTCTTTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTAGTAAATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.47%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //