Array 1 17220-16984 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAACL010000007.1 Streptococcus dysgalactiae strain iSDSE196 NODE_7_length_76331_cov_32.6508, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 17219 32 100.0 36 ................................ ATCTTGTGGCTTGCTAAAGTCAAGGAGCAATTCCTC 17151 32 100.0 38 ................................ GTAATATTGTTGCGCGTCACGGTAACTAAAATACGAAA 17081 32 100.0 34 ................................ GTTCTGATTTTGGCATGTCCGTCAAGGATGTCAT 17015 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ ====================================== ================== 4 32 97.7 36 GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Left flank : AATCAAAATCGTTCCTATCTTTTTGGACGATTATTAGCAATTTTTGAATTAATCGAGACCTTGCGTTATGGCTTGGATGGAAACAATAACGATCGTATTACCAATGCTGAACGTTATTGGACAGCCTATACTGGACAACCAACAAAATTGATGATGTTATTGGAAAATAAAATTAAGCCTTACGAAGAACCATTGAAATTAAATCGTCGTGGCAGCTGGATGAAATTAGAAAAAGAAAAAGAAGAGATTTTAGAACTGTTAAATCCTCTGTTAGAAACAGAAACAATGGAAAAACCCTTAGATTACCGCTTTATTTTTGGGTATTATGCTGAGAAAAACTATTACTATACAAAACAAAACACGGAAGTAACAGAAAGTGAGGAGTAAAAAGATGTTGGAACACAAAATTGATTTTATGGTAACTCTTGAAGTGAAAGAAGCAAATGCAAATGGTGATCCCTTAAATGGAAACATGCCGTTGATAACGTCATTACGTCTAT # Right flank : CTTGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTATTTTCTCCCCTCTCTTTCCCCCTCACATATGCTATAATAAGCTTAACAAATGCATGGTAAAGGAGTTAGAATGGCTAAGGTTCGGTATGGGATTGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGATGCGTTTGGCTGGCAATGGCGAGGTTGTGGCGGTATCCAGTCGGTCACTTGATAAGGCAAACGCTTTTGCAGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATGCGTCGATTGATGCCATTTATGTAGCAAGTATCAATCAGGACCATTTTCCTGCGGCTAAGAAGGCTTTGCTGGCAGGCAAGCATGTTCTGGTGGAAAAACCGTTTACCTTGACAGCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCACGGCTTGTTTTTGATGGAGGCTCAGAAGGCT # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 37822-38782 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAACL010000008.1 Streptococcus dysgalactiae strain iSDSE196 NODE_8_length_75174_cov_28.3689, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 37822 36 100.0 30 .................................... GGAAAAGGAGGCAGCCATCACAGGATTTCT 37888 36 100.0 30 .................................... TTTGGTCTCAATCGGTAGAGCTAGAGCCTC 37954 36 100.0 30 .................................... TAATTGCAAAACGTTAGTATCAATTTCTAG 38020 36 100.0 30 .................................... TTAAAATCGATTCTATGGCTATTTCCTTCT 38086 36 100.0 30 .................................... TTTTTTATAACTCAAAAAGTCCGCCAAAAA 38152 36 100.0 30 .................................... TCGCTTTCTGTTGAAAATCCTCTACTGAAA 38218 36 100.0 30 .................................... GATAAAGTATATATAAACGATGGTTATATT 38284 36 100.0 30 .................................... GCAAAGATATGCGCAAGGTCGGACTATTGT 38350 36 100.0 30 .................................... TTGATGGTTATCTTGAGGAACAAAGACGAT 38416 36 100.0 31 .................................... CGTGGCGCTTAAATGCTCCTATGACACGCTC 38483 36 100.0 30 .................................... ACACTTTTTTGCCACACAAGGACAGATAGC 38549 36 100.0 30 .................................... TGAGCATCAAGTCAGACAGAGTGCTCTGTT 38615 36 100.0 30 .................................... CCTTTAATTTAAAATGGCTTTGCCAGCAAA 38681 36 100.0 30 .................................... GACAAAGCGAATTGCTGAGTTGACGGGAAA 38747 36 88.9 0 ....AC...........................TT. | ========== ====== ====== ====== ==================================== =============================== ================== 15 36 99.3 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGTGGAGCTTTTCTAACAAAAGATGAAGTGGCTAATTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAAGCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATAAAGACTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATGGCGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : CAATATCGTCAATATGACTTGAGAGAGGGATAAATACAATATCCTTATGCCTTCCCATTCTTTCTATTAAAACGTTTTCATGTTATAATAGTCAAAAGGAGAAGGAGGGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCGGATGGGGTTGAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGGTTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGGTAACTAAACCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGGGGGTAACTAATCCTAAGGATGCTCTTCCCGGGACCATTCGTGGTGATTTTGCCCAAGCTCCTGGTGATGATGGAGGTGTTTTTAACGTGGTGCATGGGTCTGATTCAAGAGACTCTGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //