Array 1 19429-17936 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTND01000048.1 Escherichia coli strain 10432wA6 NODE_48_length_21127_cov_72.5816, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19428 29 100.0 32 ............................. TTACCGCTCTACGCCGCCCCGCCAGCGCTGGT 19367 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 19306 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 19245 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 19184 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 19123 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 19062 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 19001 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 18940 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 18879 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 18818 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 18757 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 18696 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 18635 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 18574 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 18513 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 18452 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 18391 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 18330 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 18269 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 18208 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 18147 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 18086 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 18025 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 17964 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCTAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19893-18662 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTND01000012.1 Escherichia coli strain 10432wA6 NODE_12_length_120387_cov_74.5207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19892 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 19831 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 19770 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 19709 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 19648 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 19587 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 19526 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 19465 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 19404 29 86.2 12 ...............C.A.C....G.... CAAACAGAGCCG G [19378] Deletion [19364] 19362 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 19301 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 19240 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 19179 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 19118 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 19057 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 18996 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 18934 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 18873 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 18812 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 18751 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 18690 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //