Array 1 45884-44025 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLJV01000024.1 Escherichia coli strain LMR3349 NODE_25_length_54593_cov_8.15558, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 45883 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 45822 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 45761 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 45700 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 45639 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 45578 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 45517 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 45456 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 45395 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 45334 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 45273 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 45212 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 45151 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 45090 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 45029 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 44968 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 44907 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 44846 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 44785 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 44724 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 44663 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 44602 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 44541 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 44480 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 44419 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 44358 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 44297 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 44236 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 44175 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 44114 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 44053 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 73414-74357 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLJV01000017.1 Escherichia coli strain LMR3349 NODE_18_length_91324_cov_9.35966, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 73414 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 73475 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 73536 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 73597 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 73658 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 73719 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 73780 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 73841 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 73902 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 73963 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 74024 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 74085 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 74146 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 74207 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 74268 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 74329 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //