Array 1 65392-63532 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJXX01000006.1 Escherichia coli strain MOD1-EC1988 MOD1-EC1988_6_length_195912_cov_34.7907, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 65391 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 65330 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 65269 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 65208 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 65147 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 65086 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 65025 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 64964 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 64903 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 64842 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 64781 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 64719 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 64658 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 64597 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 64536 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 64475 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 64414 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 64353 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 64292 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 64231 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 64170 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 64109 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 64048 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 63987 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 63926 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 63865 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 63804 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 63743 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 63682 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 63621 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 63560 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 91306-91094 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJXX01000006.1 Escherichia coli strain MOD1-EC1988 MOD1-EC1988_6_length_195912_cov_34.7907, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 91305 29 96.6 32 .......T..................... AGATTTGTAGAAAAATAGTCATTCTCTGCCTG 91244 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 91183 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 91122 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //