Array 1 1431-73 **** Predicted by CRISPRDetect 2.4 *** >NZ_APCS01000112.1 Deinococcus wulumuqiensis R12 contig114, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 1430 37 100.0 36 ..................................... ATTCATATCTCCACCCACGCCGAAGGAAACGGCACG 1357 37 100.0 36 ..................................... TGCTCCTCGCGCTGCTGGTCGGCGTGCTCGTGGGCC 1284 37 100.0 36 ..................................... TTCGGTCCCCGGCCGCCATGCAGCGCCAGGTGCTTG 1211 37 100.0 36 ..................................... CGGTGAGGCTCGCTCGCAAAAGGCCCTGAGCAAAGT 1138 37 100.0 35 ..................................... GACGGTCCAGTTCCTGCACGGCCTGTTCCACCGCA 1066 37 100.0 36 ..................................... ATTCATATCTCCACCCACGCCGAAGGAAACGGCACG 993 37 100.0 35 ..................................... CCGAAGGCGCCCCGAAGATCATGTTCGTCTGGAAG 921 37 100.0 36 ..................................... AGTGTCTGGACACCGAGCGCGGCACGGTGCGCGGCA 848 37 100.0 36 ..................................... GTGTAGATGACCCACTCATCGCCGTTGGGCAGCACC 775 37 100.0 33 ..................................... AGTCAATCGGCGTCTGGTCGAAGGCCAGAGCGG 705 37 100.0 35 ..................................... TCTGCCATGTACGCGGCGTAACCGGGCGTGGCGGG 633 37 100.0 37 ..................................... GAGGAACTGACGGGGCGGTTCGTGTGGGCGTCCCTGC 559 37 100.0 38 ..................................... TGCCGCTGCCGGAAAAACCCCGGCCTGAGCCTCAGCCG 484 37 100.0 36 ..................................... TGGTCCATATGGACACGGCCATCAACAGCGGGCCGG 411 37 100.0 37 ..................................... AGTTCGGGGCTGAGTAGGGCCTGGGCTTTTGCTTCGA 337 37 100.0 43 ..................................... CATGCCCTGGAGTCAGGCCTTCGTGCTGGCCCTGATCGCGTTC 257 37 100.0 37 ..................................... GTGATTCGCGGGGACTGGGGGCGCCGGTGAAGCCCGG 183 37 100.0 37 ..................................... AGTTCGGGGCTGAGTAGGGCCTGGGCTTTTGCTTCGA 109 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 19 37 100.0 36 GCCACATCGAAGAAGCCCAGCGTTAGGGCACTGAAAC # Left flank : CCCTGCTCGTTGAGGCCGAACTGGGGCTGACTTGCCCCTATGGGTACTGGCACTCGAGCCGCACCCGGCAAACCCATACCGTCCCCATAGATACCCGATTGCGAAGGCGTACCCTTCAAGCGATTGCCGAAGTGCGCGCTTTCATTGAGCTTGAGCGGTGCCCGCCTCCCACCTCAAAAACGGTAAAATGCTTGGAATGCGAACTGAGGAACTTCTGCGGAGATACGCTGTGACCCGTTCGCAAAAGCTGAGGCTGCACGCAGAGCCGCCTGATTTGCGAAGCGTTGTCACGGCAATTTTGCCGCTTTTCGGTGATGAGCAACCCAGAGATCCGCTCCTCATGGAAAATAAGAGTGTGTCAGACACACCGCAAATGGCCCTATCCAACGTCTCTCCTGTCATTTGCGACCAACATGGACAGGCTATACTTTTGCCGTGATGGAGGCATCACGCGCTACATGACAGCCCAAATGAATTTGAGAAAACGCGTGAAATAAGCG # Right flank : CCATGCCCTGGAGTCAGGCCTTCGTGCTGGCCCTGATCGCGTTCGCCACATCGAAGAAGCCCAGCGTTAGGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCACATCGAAGAAGCCCAGCGTTAGGGCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 62-453 **** Predicted by CRISPRDetect 2.4 *** >NZ_APCS01000113.1 Deinococcus wulumuqiensis R12 contig115, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 62 37 100.0 34 ..................................... CCAACCTGACCAACGCTGTGAACGGCAACACCAA 133 37 100.0 34 ..................................... CTCTCCCGAAATCGTGGCGGAGAGGGTGTCGTCA 204 37 100.0 34 ..................................... GTCTCAAAACGTGTGTTTCGGCAGGGACACAACG 275 37 100.0 34 ..................................... AAAGGGCGAGCCGTGATGATGCTTGAGCAGGTAT 346 37 100.0 34 ..................................... CCTGCCCCCACGCCCTGTGATGCCCGCCAATTGG 417 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 6 37 100.0 34 GTTCCGCCCGGCTGTGCGCTGGGCGGTGGATTGAAAC # Left flank : GGCTGTGCGCTGGGCGGTGGATTGAAACCTCGAACTGCCGCTCAGTCTCCATGCCGAGCATG # Right flank : CAATGCCGCCCGGTGCGACGGTGTTGAATCGCGATTTCACGGCTGATGGGCCGAACCAAAAATGGGCTACGGACGTCACCTATCTGCCGACCACGGAGGGGTGGCTCTAACCCGCGACTGCTATGGACTTGTTTTCTCGGAAGATTATCGGCTGGGCGCTGGATGAGCGTCTATATACGCCGCTGGTGAAATGGCTGTAGAGCGCCGTCAGCCTTCAGGAGGGCTCTCGCACCGCTCGGATAGGGGGAGCCAGTACACCAGTGAGGTCTACCGCCAAGCCTTGGAAAGGCTTGAAGCCGTGCAGAGTATGAGCGGCAAGGGGGAATGCTGGGATAACGCTGTTCAGGAAAGCTTTTTTGCAACTCTCAAGACTGAGCTTGCACTGCATGACCCCCAGTGGGGCCGTGCCCAGACGCGGAGCGAGGTTTTTGAGTGGATTGAGGTTTTCTACAACCGTAAGCGCCGCCACTCGGCGCTGGGCTACCTGTCACCGGTGGCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGCCCGGCTGTGCGCTGGGCGGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 1 63-2369 **** Predicted by CRISPRDetect 2.4 *** >NZ_APCS01000178.1 Deinococcus wulumuqiensis R12 contig182, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 63 37 100.0 34 ..................................... ATAGCCTTCAGGCGTCAGCTTCTTCGCGCAGTCG 134 37 100.0 36 ..................................... TGGTAAGCGACGCGCGCGCGATCTTCGCGGCGCAGG 207 37 100.0 34 ..................................... CCTCAGTTGCCAGGGCCGTTAGGTCGCGCTGTAG 278 37 100.0 35 ..................................... GACAGAGACCCCGTCCAGAGGACTCAGCGGGTCCG 350 37 100.0 36 ..................................... ACTGTCGAGGCGAACGATTATGACGACGATCGCCGG 423 37 100.0 34 ..................................... AGGGTCAGGGTGCGCTGGCCCTCGGCGTCGGCCA 494 37 100.0 19 ..................................... ATGCGGCAAGCATACTGCC Deletion [550] 550 37 100.0 34 ..................................... TCGCCGAGGCCTGCCTCGCGGTGGGCGACTATGC 621 37 100.0 35 ..................................... TCTCTGATTCTGTTCTGAACTTGGATTTGGCCTCT 693 37 100.0 34 ..................................... CATCGGGAGGAATGAACCCGCGGAGAGGTCGAGG 764 37 100.0 37 ..................................... ACGATGTCGCGGGCAATGACCACCACAGCGTCACGGG 838 37 97.3 34 .........................A........... ACGCCCTGGCTGGCCCGCATCGGCGCCCTGTTCG 909 37 100.0 33 ..................................... ACGACAGGCGACAGCGTGACGATGAACGCCGCC 979 37 100.0 35 ..................................... AAATGGGGGCAGAATGACCAGGGGATTAGAACAGG 1051 37 100.0 35 ..................................... TAGCTACCGTAAAAACGCCCGCTGGCCGTGCCCTG 1123 37 100.0 33 ..................................... TCAGCTAGCCCGCGCAAGTGCCGCCCGCCTGGG 1193 37 100.0 34 ..................................... CCCGATACGGAGCTGTCCGCCGCTCTCCGTCGTG 1264 37 100.0 35 ..................................... CTGCATGATGCCCACGCTGAGGGTTGCCCTGTCCC 1336 37 100.0 32 ..................................... TTCCGAGAAGGGTTGCCACGTGTCGACCGCGC 1405 37 100.0 34 ..................................... CTCCGAGGGACGCATTCGCGTGCTTGTCACGAAA 1476 37 100.0 35 ..................................... TCAAGCGGATGCTTATCGGTCATGCGGGGAGTCTG 1548 37 100.0 35 ..................................... CCGCTATCCAGGGTAACGAGTCCCGTAACGGCACA 1620 37 100.0 36 ..................................... CTGAACACCGAAATCATGCCCGCCTGGGAGCGCGGG 1693 37 100.0 33 ..................................... AGCGCGGTCATGGGTGCCGCCTAAGACGCCCTG 1763 37 100.0 35 ..................................... TTGCGCTGCCCGTGCGCGGTGATAAGTGCCCCGAG 1835 37 100.0 34 ..................................... GCCGGGGGGTTGGCCGCCGGGTCAAAGACCGCGT 1906 37 100.0 34 ..................................... AAAACGTCGCTCTACGCCACCGCCACAGCGGTTG 1977 37 100.0 35 ..................................... CGTAACGCTCTCCGCGTGACACTGGAGACCGTCAG 2049 37 100.0 36 ..................................... TGAGCGACGACCAGACCACTCACGAGGTGACCCCAC 2122 37 100.0 33 ..................................... CTAGAGTTCCAGCGGCGGGGCGCTCCGCATCTG 2192 37 100.0 34 ..................................... TGCCGCCACGAGTCCGTGGGGAGCGCCGAGGACG 2263 37 100.0 33 ..................................... TGTAGATGAGGCGTTGCAGTCCATGCTTGACGA 2333 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 33 37 99.9 34 GTTCCGCCCGGCTGTGCGCTGGGCGGTGGATTGAAAC # Left flank : GGCTGTGCGCTGGGCGGTGGATTGAAACCCGGCTGCCACGCCAGAACCACCAGATACCCGCCG # Right flank : CGGCCCCTAGAAGTCGCCATCGAGTACACGACGCGTTCCGCCCGGCTGTGCGCTGGGCGGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGCCCGGCTGTGCGCTGGGCGGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 1 868-399 **** Predicted by CRISPRDetect 2.4 *** >NZ_APCS01000199.1 Deinococcus wulumuqiensis R12 contig206, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 867 27 100.0 46 ........................... GTCAGCGCAGGCTTGTTCATCTCGGCTTCGAGGTCGGCCACATCGA 794 27 100.0 45 ........................... CTCACGCCGAGCCATGTGCGGAGCCTCGCCCGGAAGCCACATCGA 722 27 100.0 54 ........................... CGGCAGAGGAGAGGGGCGGCAAGCGCAGGCCAAAGGCCGGGAACGCCACATCGG 641 27 100.0 45 ........................... GGTAGGGGAGAGGGCGCTTCGGGCATCGGGACGAAGCCACATCGG 569 27 100.0 47 ........................... AGGAAACAGGGCTTGCGCTGCCTTCATCGCTTCGAATGCCACATCGA 495 27 96.3 43 .................C......... AGACAGCAGCGGCAGCAGCGAACTCCGGCGAGCGCCACATCAA 425 27 96.3 0 G.......................... | ========== ====== ====== ====== =========================== ====================================================== ================== 7 27 98.9 47 AGAAGCCCAGCGTTAGGGCACTGAAAC # Left flank : | # Right flank : CACGAAGATCAAGAACCTGCGCCGGCCGCTGGCTCGTGGCTGGGCCGCTAGACCAAGGATTCGCTTACCCAGAATCGACCTGTCAACACGGAAAACAGCCAAGGCTTTTGTGCCACAGTTGTGCCACAGTTTTTCTGGAAAGCCTTGGAAAAAGCCGGAAAAAGCCAGACGCCTCACACGCAAAAACCCTCTCCCAGTGGGCGTTTTTGGAACATCACGGAAAATGCCGGAAAACCCGGATGAGTATTCGTAATCAGTAGGTCGTCGGTTCAAGTCCAACCCTCAGCTCCAAGAAAAAGCCCCGCCTAGCGCGGGGTTTTTGCTTTAGTGGTTTGCAGTAGGTGCGCCACCAAACGGGTTGTGCCACAGCTCAGTAGGTGACAACTTCGTCTCCAGCCG # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAAGCCCAGCGTTAGGGCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 38551-42497 **** Predicted by CRISPRDetect 2.4 *** >NZ_APCS01000045.1 Deinococcus wulumuqiensis R12 contig046, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 38551 37 100.0 33 ..................................... AGCCAGGACTACCGCCACACTGCCCGTGCCATC 38621 37 100.0 34 ..................................... GTTTCATGGTCTGGCTCCTACGACGATGAGCGAG 38692 37 100.0 35 ..................................... TTGTTGCGCTCAATCCAGCCATACCCGCAGATGTC 38764 37 100.0 35 ..................................... TCGCGCATCTCGGAGCGCAACCTTGCGCGGGCGTG 38836 37 100.0 34 ..................................... TGGGGTTGCTGGAACTACAGGCACCCTGAACCCG 38907 37 100.0 36 ..................................... ACGTAAAACGTCACGGTGAAACAAGCCCGCCGCTTG 38980 37 100.0 32 ..................................... GATTACCGCCGCACACAAGGTGCCCTGAGCAG 39049 37 100.0 35 ..................................... TTCGGTATCATGAAGCCATGACCGGAGACATCGTG 39121 37 100.0 34 ..................................... CCCGCTCGCAAGGGTGAAGAGCTGGTCTACCGGC 39192 37 100.0 33 ..................................... AACTTTTCCGAACTGGGTCAGGACATACACTCG 39262 37 100.0 32 ..................................... TCGCCCCAGTGGAACGAGCCGCTGGAGACGAC 39331 37 100.0 34 ..................................... ATACCGGGCCACGCTGATAAGCGCGTCGCCCGCG 39402 37 100.0 35 ..................................... ACCTCGCTTCCGGCTACGCCGCCGCGCATTTCACC 39474 37 100.0 34 ..................................... CCCCCGTCACCCTGCACCTGAGCATCGACGGCGC 39545 37 100.0 34 ..................................... ACGATTAACAAGATGAACGGCGTGGCGCTGAGCA 39616 37 100.0 35 ..................................... GCCGCGTGGTTGTGGGTGCTGCGGTTCGTGCTTGT 39688 37 100.0 32 ..................................... TCAAGATTTGACGGGGACAGACCGTGAATCCC 39757 37 100.0 33 ..................................... CTCCTGGTGGCTCAGGCAGCGGCGCAGGCCGGG 39827 37 100.0 33 ..................................... AACGTCAAAACACTCGCCGACGCCTGCGCCTGC 39897 37 100.0 34 ..................................... TCCGGTACGCAGACCATGCTGCTCATCACCTTGC 39968 37 100.0 34 ..................................... TCGCGGTCCTCGGTCTGCCGCTGCGTCACGGCGT 40039 37 100.0 35 ..................................... GCTCCCCCCAACACGCATCGGGGGTACCCCTCACC 40111 37 100.0 35 ..................................... ACGCTAAATCTGGCAGGCAACCCGGCCTACTTCGT 40183 37 100.0 33 ..................................... CGCAGCCAATCCACGTCCTGCATGGTGGCAGGG 40253 37 100.0 34 ..................................... CCGATTGGCCGGTTCGCACCAGGTGGATGTTGTT 40324 37 100.0 36 ..................................... ACCGGGACGCCTACCGATAAGCATGACGACCAAGTG 40397 37 100.0 33 ..................................... TGTAGATGAGGCGTTGCAGTCCATGCTTGACGA 40467 37 100.0 35 ..................................... CTGCGGTCAAGCTGAATCGCGTGGTCTGGGTAGAG 40539 37 100.0 35 ..................................... CTGCGGGCATCGCCAAACAAGCCCGGCAACGCAAA 40611 37 100.0 34 ..................................... CTCCGACAGTGACTCATCCTCCGAACGGTAGGAC 40682 37 100.0 34 ..................................... CAGAACGGGTCTAGAGCCACCTCGCGCACCGCGT 40753 37 100.0 33 ..................................... TCCTGAAGGACAACGGGCGCGGCAGGCAGCGGG 40823 37 100.0 35 ..................................... ACCGACGAAAACGGCAACCCCGTGGAAGCCGTGAG 40895 37 100.0 35 ..................................... AGTGCTGCTCAGTGCCTCGGCGCGGGCCTGCTCAG 40967 37 100.0 34 ..................................... ATACCGCACGCGCTCCGGCACACGCTGGGCGAGG 41038 37 100.0 34 ..................................... CTCTCCGATGAGGGCGGTTGGGATACCCCGTTCC 41109 37 100.0 33 ..................................... AACTCAAGGGCGTGAACGGCATGAACCAGACGA 41179 37 100.0 32 ..................................... AGCGCGTCGGTGTCGCTGACCTCAGTGCCGGG 41248 37 100.0 34 ..................................... AGCATTAGTCATCCATTGACCCTAAGAGCATGGA 41319 37 100.0 34 ..................................... AGCGGGGAGTGGCCTGAGTTCGTCGGGGTCAAAG 41390 37 100.0 34 ..................................... AGGCGGCCTTGCCGACGACTGCCGCCATCAGCCG 41461 37 100.0 34 ..................................... TTCCAGGAGCCGCACCGCCTCTTGGTCCAGCGCG 41532 36 81.1 33 ...........................C.-C..CGCT GGCCGGTGGCGCCCGAGATGTTCCGCCAGCGCG 41601 37 100.0 34 ..................................... GGCTCTGGAACCTCGGTGCAGGCGTCCTACTCGG 41672 37 100.0 34 ..................................... ACACGCGCATGGAAAACGCTACAGAGGCGGAACC 41743 37 100.0 34 ..................................... TTCTCGCGCCGCCGCTCAAGCTCCATGGCGGCTC 41814 37 100.0 35 ..................................... CGGCCCGGAGGCGCGGCCACCGAACGTCTTGAGCG 41886 37 100.0 37 ..................................... TTCGCGCTGGTGGTCGCGTGCGCGGTCAACTGCTGCA 41960 37 100.0 35 ..................................... TCCTGCATCTTGGCGCGGGTCTCGGCAACCATCGC 42032 37 100.0 35 ..................................... TGCCGGGGGCAGGTAGGGGCCGACCAGCTCAGCCG 42104 37 100.0 34 ..................................... CGGGCGAGTGCCTAGCGGCGAGCGCCTTCCCTGC 42175 37 100.0 35 ..................................... TCCTGGCACGCCCGAAAAGCTACCCTTCCTCTTTC 42247 37 100.0 34 ..................................... ATAGTTGACTAACCTCATAGTCTGCCCGCTGGGT 42318 37 97.3 33 .....................A............... CCCCGTTGCTCTGGGTGGAAAAGATACTCTGTT 42388 37 100.0 36 ..................................... TGGCAGTTCGAGGCGCAGACCAAAGCCGCCCGCGCC 42461 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 56 37 99.6 34 GTTCCGCCCGGCTGTGCGCTGGGCGGTGGATTGAAAC # Left flank : CAGGGCCCACTATCCGCCGTACCTCCACCGATGATTGACTTACTGGTCTGCTACGACGTGAAAACCGAAACCGAGGCCGGACGCCGCCGCCTGCGCCGGGTCGCCAAAATCTGCGTGGCGCACGGGCAGCGCGTTCAGAACAGCGTCTTCGAGGTCGGCGTCACCGACGTTCAACTGCTCCAGCTGCGCGAGAAGCTACTGAACGCTATGGACGTGACCGAGGACAGCATCCGCATCTACCGCCTGCGTCAGCCCCGCGAAAAATTCGTGGAGGCGCACGGCGTGGATAAGTACATGGATTTCAGCGAACCCCTGATTCTGTAGCGCGAACCTGGTGCGACGGAAAAGACCGGGAGGTTTCGCGCCGCCTAAAAAGTCCGTACAGGACGAGCCGCATGACAAATAGATATTTCCGATACGTCCCCCTTTCTGGACTTCGGCGCAGGGTTCGCGCAAACTGATGTCGGGAAGTCGTCTGGCACGTATTTAGACGATGAACT # Right flank : CCCCGGACCTCCAGCTCCAGCCCCAGCACGTCAGTTCCGCCCGGCTGTGCGCTGGGCGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGCCCGGCTGTGCGCTGGGCGGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA //