Array 1 39516-38205 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOXZ01000021.1 Escherichia coli strain 7_Esco_CA-NL NODE_23_length_109062_cov_39.085648, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 39515 29 100.0 32 ............................. GCAAAACCCTCGACTGGACAAATACCGGCGCG 39454 29 100.0 32 ............................. GTCTGTTATGCGAATATTTTTATTCTACTTTA 39393 29 100.0 32 ............................. GTTTTTACTCTCTGCCGCTGAGCGTCACACGG 39332 29 100.0 32 ............................. GACTGCATATGAGCACGAGACACCCGGTAATT 39271 29 100.0 32 ............................. AACGTCAGGTTGTCGCCGCTCTGCGTGGTCGC 39210 29 100.0 32 ............................. TTCCAGCATTTACGCGGGGGTGTGCGAATGAT 39149 29 100.0 32 ............................. CCGGTCGCGCTATTGAGCCGTTCTTTTCACAG 39088 29 100.0 32 ............................. ACCATAAACATTATCCCCCGGCAAATTACCGC 39027 29 100.0 32 ............................. TCGATGCCGAACACGCTAAATATCTCGCAAGT 38966 29 100.0 32 ............................. GTGCGTTGTTGACGGTCTGACCTTCCCGCTCC 38905 29 100.0 33 ............................. GCCTGATTCCCGTATTTGTGAGAGTAATAACGC 38843 29 100.0 32 ............................. CTATTCCCCTGACCGGACATACCCTGGACAAT 38782 29 100.0 32 ............................. GGCGTCAAACTCTTTGTCACTCATACCAAAGA 38721 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 38660 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 38599 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 38538 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 38477 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 38416 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 38355 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 38294 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 38233 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 65859-65219 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOXZ01000021.1 Escherichia coli strain 7_Esco_CA-NL NODE_23_length_109062_cov_39.085648, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 65858 29 100.0 33 ............................. GGACCGACCAGTGGCGGCGGGGTAAATAAATGA 65796 29 100.0 32 ............................. TCTTTCTGCTCTATCCCTGAAGAGCGTACGTC 65735 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 65674 29 100.0 32 ............................. TAAAAATTAGGCTTCCACGCCTCAACGCCAGT 65613 29 100.0 32 ............................. CCCTCCAGGCTATCGCAGCACTGGTCCCGTTT 65552 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 65491 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 65430 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 65369 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 65308 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 65247 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //