Array 1 28548-27258 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIAZU010000013.1 Lactobacillus jensenii strain UBLJe-01 NODE_13_length_44495_cov_219.910937, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 28547 36 100.0 30 .................................... ATTAGGATACTGTGTAGGATATACCTTCCA 28481 36 100.0 30 .................................... TTGTAAAATTTGTGATAATGATTTTCGTGT 28415 36 100.0 30 .................................... TTCCAATGGTGAAACAAGAGTTATCAAATA 28349 36 100.0 30 .................................... TGTTGCAAGCGCCGACCCTTATGGTGGTAT 28283 36 100.0 30 .................................... AGTAGCTCAACAACTTCAAAGCGAAGTTGG 28217 36 100.0 30 .................................... TTTTTGAGCTGTTTTATCAAGCCAAGAAGG 28151 36 100.0 30 .................................... GGATACTGGCAGGCCTTCCATTTATCAGTT 28085 36 100.0 30 .................................... TGTTTAAAGTAGTAAACAAGACTATTGAGC 28019 36 100.0 30 .................................... CTCTATTTTAATCTGCATACATACATGTAA 27953 36 100.0 30 .................................... AAGACAATACGTAATAAGGATATTGCACAA 27887 36 100.0 30 .................................... AATATATCAAGCCTGAAGCATTAGATGGCT 27821 36 100.0 30 .................................... ATATCTTTGTGGTTCAACATGGTTGTGTAT 27755 36 100.0 30 .................................... GATGCAGACCATGCATCCCTGGTACACCAC 27689 36 100.0 30 .................................... TAAGCTTGAATTAGCATTAAGAGAAGGTTA 27623 36 100.0 30 .................................... ACTACTTTCAATTTCTCTGTCAAGCTTCTT 27557 36 100.0 30 .................................... TACGCCTAGTGGCTATATTGACTTAACTAG 27491 36 100.0 30 .................................... AAATTTTTGCAGGAAATTGCCGATGAGCTA 27425 36 100.0 30 .................................... GAAAACTTGAAGTCGCAACTCAATAGCGAG 27359 36 100.0 30 .................................... AAAAGTAGTCGATGAATATTTAAGGTTAGT 27293 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.9 30 GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC # Left flank : CACAGGATTATCTTAATTCTTATCAGAATAAGATTATTTCAAATCTGTTTGATACTTTAAATGAAAATCAGAGAAATAAAATATTTAATACGTGGCGTCAGCTGAGTACTGATATTCAAGATATAATATTTATGACTGATTTACCAATTGAAGTTGGTGAAAATCTAGATTTAAAGAAGCTATTCAAATTTGATGGAATTCATTTTGATGATTCTGTATTAAGTGATCCTTATGCTATAATTGAAACAGTTGTTAAAATTCATATTGAATGTAAATTGAATTCGGTTGTTACTTTTGCAAACGTAAGTCATTATCTTACAAAAGAACAATTGAATAACTTAATTACCTTTATAAACGAAGTAAATATGCCTTTGATATTAATAGAATTTTCATCTTCAGATTTTAAGGTTGTTAGTGGGGATGCAAGAGTCTGTTATATTGATGAGGATTTTGTCGACTGGTACTGATTTTAAATCTGAGAAGCTGATGATAAAATGTCG # Right flank : GTAACAAAAACCAATTTAATTAATATGATCATATTTTAATTTGAGGAGAAAACTAAGTATGTGGACATTTCTTAAATTTTTTCAGACACCAGTAGGCTATTTAATTGGAATGGCTATTCTTGTCATATTGCAATACGTGTATGAATGGATAAGAGACGAGCGCTAAAATATTGTTTGGTTTATTGGCAATTAATATACTTTAGAAAGCTGCAAAACACTATAACTTATAGGAGATAAAAATGGAAGGTTTAGCATATGTTATTCTATTTATAGGAGCTTTTATATATTACTATTGTAAAAATAACCGTAAAAAATAATACGATTTTTAAAAGTTACTGAGGGGGCATAATATGGATGCAATTATTGATTTCTTTACTAACCCTATATGGATTACATTTATAACAATTTTATATTTTTCTATGGAGTTTATAGAAAATAAGCGAAAAAAATAGCGCTTTTTTATTGGTAAAGTAATAACAATTATGTCAGTTTTAAAAGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAAGGTTGTTAAATCAGTAAGTTGAAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //