Array 1 3731285-3729178 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034773.1 Salmonella enterica subsp. enterica serovar Braenderup str. ATCC BAA-664 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3731284 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 3731223 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 3731162 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 3731101 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 3731039 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 3730978 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 3730917 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 3730856 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 3730795 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 3730734 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 3730673 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 3730612 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 3730551 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 3730490 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 3730429 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 3730368 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 3730306 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 3730245 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 3730183 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 3730122 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 3730061 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 3730000 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 3729939 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 3729878 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 3729817 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 3729756 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 3729695 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 3729634 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 3729573 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 3729512 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 3729451 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 3729390 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 3729329 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 3729268 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 3729207 29 89.7 0 A...........TC............... | A [3729180] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3748669-3747543 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034773.1 Salmonella enterica subsp. enterica serovar Braenderup str. ATCC BAA-664 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3748668 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 3748607 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 3748546 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 3748485 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 3748424 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 3748363 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 3748302 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 3748241 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 3748180 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 3748119 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 3748058 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 3747997 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 3747936 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 3747875 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 3747814 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 3747753 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 3747692 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 3747631 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 3747570 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //