Array 1 42316-43008 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZIJ01000011.1 Azospirillum doebereinerae strain GSF71 Scaffold11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================================================================================== ================== 42316 32 100.0 34 ................................ AACGCCTGCTCGACGGCGTCCGTGGCGCTTTTCC 42382 32 100.0 36 ................................ AACAGCGTCGTGCAGAGCATGACGGGCGCGTGGCAG 42450 32 100.0 34 ................................ CTCGACGGCGTCGCCCACCTCCAGGCGGCCGAGC 42516 32 100.0 35 ................................ GCCATGGGAATTACTCGCCCTTCTTATCGCCGAAG 42583 32 100.0 35 ................................ GGGTCCGTGGGGCGTGTCTCTCTCCCCAGCCGCAC 42650 32 100.0 33 ................................ TACGGTGGCGACGCCTTCACCTCGGGCACGGCC 42715 32 93.8 99 ......A.......................G. TGATCGTCGGTGGGGAACGGCAGGTCGGACAGCCACCGATCCAAGCGGAAGCACGCGGTGGGGCGATTTTCGCAACTTTTGCAGCGTATGCGTCAAGGT G [42729] 42847 32 78.1 34 .......TT........A.TA..C.....C.. ATGCGTTTGGAAGGGGCGCGCTTCACCATGGCGC 42913 32 81.2 33 ......T.....AAA.AA.............. CCCCGCCGCGTCCGCTTCCGGGCGGCCGGCGGG 42978 31 71.9 0 .G....T.....A..CAAA......-...C.. | ========== ====== ====== ====== ================================ =================================================================================================== ================== 10 32 92.5 42 GTCGCTCCCCATGCGGGGGCGTGGATTGAAAC # Left flank : GGTGTCGAACCCCGGCCTTCTGCTGCTCGATGAGCCCTTCGGCGCGCTCGACGCGCTGACCCGGCAGGAGATGCACCGCCTGTTGCGCCGCATCCGCGAGGAGCACGGCTTCGGCGCCGTCCTCATCACCCACGACGTGGCGGAGGCCGTCGCGCTGGCCGACCGTGTGCTGGTGCTGCGCGAGGGCAAGATCGCGCTCGACTTGGACATCGGCGGCCCGGACCAGCGCCCCGACGAGTCCGCCGTCGCCGCTCTTGAAGCCCGCATCCTGCGGGACGTATGATTCGGGTGGCCGCCGGGGCGGCAGGCGGCCGGATCGCGGGCGTGTGTCCGGTGCGAACCCCAAGCGGACGGGAAACCCCCGCTGGGTTCGCACGGTAGGGCAATCAAGGGCTTACGACCGGAGACAGACGACTGGCGCGCCTGTGGTTCGGCTGTCCGCAGGGGTTCGCGGAACTGCCGGGATTGTGGCGCCTTGGACAAGTGGATAGATGTTGGGG # Right flank : CAACGCAGACCATGCCAATTGGATGGCGGGCGGTTCGCTTCTTCTGCGGAGGACGGACGGCGGCCTCCGATCAGCCGGGCTTCGTCCATTCCCGTCAGGACAGCTTGTCTCACCCCCGCCGCAGCCGGGCTTCCAGCCACAGGCTGTAGCGGGAGGCCGCGACGCAGAACACCACGTAGACCAGCGCCGCGAAGCCGAACGCCTCGTCGTAGAAGCCGAGCCAGGCGGGGTCCTGGGCCGCGCTGCGGGCGGTGTTCAGCAGGTCGAACAGGCCGATCACGACGATCAGCGTGGTGTCCTGGAACACCCCGATGGTCAGGTTGACGATGGACGGGATGACCGTCCGCAACGCCTGCGGCAGGATCACCAGCCGCATCGTGCTCCAATAGCCCAGGCCCAGGGCGCGCGCGCCCTCGTACTGGCCGGGTGGAACGGCTTGCAGGCCGGCGCGGACGATCTCCGCCAGATAAGCCGAGACGAACAGCACGATGGCGACCTGC # Questionable array : NO Score: 8.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.62, 5:0, 6:0.25, 7:-0.63, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGGGCGTGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 11834-13068 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZIJ01000001.1 Azospirillum doebereinerae strain GSF71 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 11834 32 100.0 34 ................................ AAGGAGCAGTCCGCCGCCATCGACAAGGCGGCGG 11900 32 100.0 35 ................................ TGTAAATTCGACGGTTAGCGCGTAGCGCATGCCTC 11967 32 100.0 36 ................................ GCCCAGCGCGCCGCGATGCTCTGCCAAGAGACAGAC 12035 32 100.0 35 ................................ GATGGCTTGGTCGATAGCGTCGGCGCGGTCCCGTC 12102 32 100.0 35 ................................ CGCGTCCCACAGCCGTAGGCGATCGGCGCGGGCGG 12169 32 100.0 35 ................................ AGCGACGAGCCGGAACATCTCTGGCCATCGGTCGA 12236 32 100.0 35 ................................ TGCTGCTGATCGGCGCCGAGCTGGTCGCCCAGGTG 12303 32 100.0 34 ................................ TGGGCGATGTCGGTGCTGTCCACCGACGCGAAGG 12369 32 100.0 34 ................................ GCCGCCTGAGTTGATGGTGGGTGATGAGTAGATA 12435 32 100.0 35 ................................ TCCGAAACCGAAAGGTGGCTTGCCCGCTGGTTGCA 12502 32 100.0 35 ................................ TGGCAGTCGGGCCGGGGAGGTCGCTCTCCCCGGCT 12569 32 100.0 35 ................................ GTGAGCGCGAAACCGCCTTGACGCCTGCCCCGGAG 12636 32 100.0 35 ................................ AGTCGGTCGACAGCGAGCCGAAACCGTTCGCGGCC 12703 32 96.9 34 ................A............... CGCCGCCCCGAACTGGTCGTGAAGGTGAACCGGA 12769 32 100.0 37 ................................ AGTGTGCCGCCCGTGGCGACGGAGACGGAGCCGGCGA 12838 32 96.9 33 ................A............... AGCCTCCAAAAGGGCCCCAGATGACGCCGCTGG 12903 32 93.8 37 ..........AC.................... TGGCTCGAGGGCGCGCTGGACGAGGACGAGGACGGGT 12972 32 100.0 33 ................................ ACGGTCATCTCGGCCATGGCCGAGTTCGAGAGA 13037 32 93.8 0 ..........................CC.... | ========== ====== ====== ====== ================================ ===================================== ================== 19 32 99.0 35 GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC # Left flank : GGACGGCTATCCGCCGTTCCTGTGGAAGTGACCCGGCCATGATGATGCTCATCACCTACGACGTGAACACCCAGGACGCGCCCGGCCGGCGCCGGTTGCGCCGGGTGGCGAAGGCGTGCCGCGACTTCGGCCAGAGGGTTCAGTTTTCGGTGTTCGAATGCGAGGTCGATCCGGCACAATGGACCGCCCTGCGCGCCCGCCTGATCGGCGAGATCAACCCGGACACCGACAGCCTGCGCTTCTATCACCTCGGCGCCAACGCCGCCCGCCGCATCGAGCATGTGGGCGCCAAACCGGCATTGGATCTTGAGGGGCCGCTGGTTTTTTGAAGCGCTGCGAACCGGAAGCGGACGGGAAAACCCTGGTGGGTTCGCACATGTGTTTCATCAACGCGTTAGGATGCGACGGTGATGGAAAGGGCACCGTTTGCCGGATGCGACGTGAAGGTTCGCGTTTTGGCCGGGATTGTGGGTTCTTGGACAAGTGGATAAAGATGAGCC # Right flank : CCGACCCCCTATCCCGACACCCCGGCCAGCGTTCGTGGAGCGGCGATCACCTTGCCGGCCTTCATCGCCTTCAGCATCACCGAAGCGCGCCAGAAGCCCAACTCCGCGCCATCGACGAAATGCACGTGCCGGTCGGCCGACAGGTCGCCGACCAGGCAGGTCACCGTGGTCGCGTCGGCCCGCGCGGTACCGTAACGGATCTCCCCGGCGGCGGCGGCGGCGGACAGAAGACGTTCGATCTCCGTCGCCTCGGCCTCCGTCACGTCCAGGACCATGCGCGGGCCGCCCGCCGATTTGCGGAAGTCGGAACGCTCGGCCATCGTGCGCCGGTAACGCTCCGGATCGAAATTCGCCAGCTTCAGCCCGAATTTCAGCAGGACGCACAGGATGCCCGACTTCACCAGCGCCCCGGCCACGCGGCCGAACGCGCCGCCCGGCGCGCCGCCGCGCGCCTCCATCAGCAGGGAGCGCCACGTCGGCGGCCATTGCGTCCTCAAACG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //