Array 1 14-313 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCGG01000064.1 Lactobacillus helveticus strain IMAU30143 Scaffold64, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 14 32 100.0 36 ................................ AACAATATACTGTATTTGACCGTCACTCACGTGGCT 82 32 100.0 36 ................................ CCACATGACCCGCAGTTGGTCGATAGTAGCATGGTT 150 32 100.0 34 ................................ TTTCCCAGTATGGCTCACTTGGCTCTGGTATCTG 216 32 100.0 34 ................................ AAAGGTGTGTGGATACCTGCTGAATATTGGTTAG 282 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 100.0 35 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : TTATCGGCTACACG # Right flank : TTTTAGGTCCATTGCACTCTTGCCAGTGAAGTCGTGTCGCACTCCTTGTGATGCACTTGTGGGTGTATTAGTCGGCTTCTTCAACCCAGGCTTGAAGTACTAATTATTAAGAGGAGATTATTCAGATGACAATCGAAGAGATGCAAAAAGGCTATCAAAATGAAGTTGCTTATCAAAAACATATGCTTCGCAATCTAGGCTATTGATTCCAACTCTTTTTAACAGTTAGTGCGATTGGTTTGGTTTTAATTTACTATTTCCATCAATCAACTATGTGGCTCTTTATAATCGGAATTATTCTGATGGTCGCCGGTGTTTTAGGAATGTTTGCTTTTGGCTATGCTTCTTGGCGCGGACGGCAGAATGTCACTCTGGTAATCGAAGACTATGAGAAAAAGATTGCAGAAATTAAAAAGTTAGATCAAAATGCTTCCGGAACGGAAAAGATCCGTTTCAAATGATTCTTATATGAATAAAACAATTTCCCCTTCTCTAGAAAT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 29869-29596 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCGG01000004.1 Lactobacillus helveticus strain IMAU30143 Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29868 29 100.0 32 ............................. AACGTTTGCGTAAACTTGGCTGAATGTTGCAA 29807 29 96.6 32 ............................C AACGGCATCACTAATCGACCAAGCGCACAAGA 29746 29 96.6 32 ..........T.................. CACCATGCTGTTAGCAGATTATAACGCCCGTG 29685 29 100.0 32 ............................. TAAGAGGGCGTCAGGTCAGTTTATATGGTCAA 29624 29 72.4 0 .....................CAACCAAA | ========== ====== ====== ====== ============================= ================================ ================== 5 29 93.1 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TAGTGACATTATTTCTTATAAAGTAAATCAATCTGGACATGATGAGAAAAAACATCATGGTATTACACGTGCCGTTGTTGGCGGTGCAATTGCTGGAGGTGTAGGTGCCATTGTCGGTGCCACTACTGGTGGTAAACAAAATGATTATATTGATCACCTTGGTTTAATTATTACTTTAAAAGACGGTAGTAATTTTGAAATTGTATTTATTAGAAAAATTGAGCAAGAAAAAGCCAATAGCTTTACTGCCAGAGATGACATTCAAAGGTTTAACACTTTAGTTTCTATGATTGATGCAATCATAGCTAAAAACAATCAAACTGCTAAAACTACTTCCACAGAGAACACTAATCCTGATCCGGCTGATGAAATTCGTAAATTCAAGAAATTGGCTGATGATGGAATCATTACTCAGGGCGAATTTGAAGCTAAAAAGAAGCAGCTTTTAGGGCTGTAAAACAAAAAAAGACTCACACCAGAGAACTTAATCTCCGATGTGA # Right flank : AACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAAATATTTCTTCGCTGCATCGCTCATGCGATCAGGCGTCCAGACCGGATACCAAACAAATTCAACATCAACATTTTTTACTTCCGGCACTTTTTTAACTGCCTGAGTAATGCTATCAATTAGGTAGCCAGTTAACGGACAAGCAGGGGTAGTCAAAGTCATATTGATTAAACAGATTCCATCTTTGTCCAGATCGATTTCATAAATTAAACCTAGATTGACTACATCAACATTCAATTCTGGATCGATAACTGTCGCCAATTGATTGATAATATCGTTTTTAATTGTTTCACCGTCACGCATTTTATCCCGCATCCTTGCCAAAAATTTTAGCTTTGATTGCTTGGCCGGTTGGAGTACCAGCTAAGCCGCCGATTCCGGTCTCACGCAGGGATGCTGGCATTTGATGACCAACTTTTTTCATAGCATCGATACATTCGTCGGCTGGGATCACG # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.50,-9.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 512-14 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCGG01000172.1 Lactobacillus helveticus strain IMAU30143 Scaffold172, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 511 32 100.0 35 ................................ TATCATAGTAAAGTTAGAGAAGATAATGCATTCTT 444 32 100.0 35 ................................ AAACTACAAAGTCAGATTGTTAGATAGTGCAGGTC 377 32 100.0 34 ................................ ATCTTTAACTAAGCCATTAGATTGTTGTTTTTTT 311 32 100.0 35 ................................ ATCTTTAATGCCTCTATTTTTGTAAGTTGTCTTCC 244 32 100.0 35 ................................ TACTTGATTGTGCAGAGCCGGGCACATATAGATGC 177 32 100.0 34 ................................ ATGATGGTCTTGTAAATTGCATGACAGGCTTTTT 111 32 100.0 34 ................................ ATATGCTACTAAGTATGCTTTAGGAAAGTTGTTC 45 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 8 32 100.0 35 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : TTATCGGCTACA # Right flank : TACCTGTAAATGCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [13.3-11.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 514-14 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCGG01000013.1 Lactobacillus helveticus strain IMAU30143 Scaffold13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 513 32 100.0 36 ................................ AAGGATATCTGGGTAAAGGCAAAAGCTTATAATATT 445 32 100.0 34 ................................ AAAGCGTGCAGGGTGACTATGATAGGTGGAAGGC 379 32 100.0 36 ................................ AAATGTTAGCAAATGAAGAAACAACCGTTAAAGATC 311 32 100.0 34 ................................ TGTAATACCTCGGCTGCCATAGCTTTACCTGCAG 245 32 100.0 35 ................................ AATGATCTTGGACGTTGACATTGATTACTTGCTAG 178 32 100.0 35 ................................ TTTAAATTAGGTGGTTTTATCTCTGGTGCTACCGA 111 32 100.0 34 ................................ TCATAGAGGCTATGGCAAGCCAGAGCTTGAAACA 45 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 8 32 100.0 35 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : GGAGATCTTGACGAATACCCACCGTTTATGTGGAAGTAGGTATGCAGCATGATGGTAGTAGTTAGTTACGATATTAATACGGAAAGTAAATCTGGTCAGCGAAGGTTACGTCATGTAGCCAAAATATGCTTAGATTATGGACAACGAGTTCAAAATTCCGTTTTTGAATGTAAAGTTAATTCGATGCAATTAGAGTTGATGAAAGAAAGACTACTAGACGAAATCGATGATAGCCAAGATAGTTTGTATTTTTTTAATTTAGGGAAGAATTATAAAAATAGAATTAAGTCATATGGAATTAAAGAGGTTATAAATTTAGAATCGCCTGTAATATTTTGATATCGGTGCGAACTGTATGTGAACATGCTTTTAGTGAAGATTCGCACCAATTTTAAACAGGTGAAAAGTGATCTTTTGATAAAAAATATATTTTTATCAGGGTAAGTTAATTTGAAGCCCAATATTTAGAAATGAATTGAAATCATGATCTAAATATTGCG # Right flank : TACCTGTAAATGCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //