Array 1 133085-136370 **** Predicted by CRISPRDetect 2.4 *** >NZ_ARXR01000003.1 Alcanivorax venustensis ISO4 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================== ================== 133085 29 100.0 32 ............................. GCGGAAATCGGAGCGCTGGATGTCCAAGGGCA 133146 29 93.1 32 ........................GC... GCGGAAATCGGAGCGCTGGATGTCCAAGGGCA 133207 29 96.6 33 ...........C................. GACTTTGACCGGTTTTGCCGGTGCGCCTTCGAC 133269 29 100.0 32 ............................. AATCTGGTGCCGCGCCGTGGCGCCCGCGTGAT 133330 29 100.0 33 ............................. GACTTTGACCGGTTTTGCCGGTGCGCCTTCGAC 133392 29 100.0 32 ............................. CGACGGCGCCGAGTGATGGAAATGCTGTTGCA 133453 29 100.0 32 ............................. CGACGGCGACGAGGGATGGAAATGCTGTTGCA 133514 29 100.0 32 ............................. ATAATCCGGTCATCGCGCTTCACCTTGTAACG 133575 29 100.0 32 ............................. ATCGCACTGACCGGAACGCCTACATCGCGTCT 133636 29 100.0 32 ............................. CCGGAATGAGCTGGCTCCCCCTGCTGAAGAAA 133697 29 100.0 32 ............................. TCGGCGTCACCGAAAAAGGCGGCGTGCGGCCC 133758 29 100.0 32 ............................. TCGGCGTCACCGAAAAAGGCGGCGTGCTGCCC 133819 29 100.0 32 ............................. GAAGGCGCGACAGCCGCGCAGCTGGCTGCCAT 133880 29 100.0 32 ............................. ATAATCCGGTCATCGCGCTTCACCTTGTAACG 133941 29 100.0 32 ............................. ATAATCCGGTCATCGCGCTTCACCTTGTAACG 134002 29 100.0 32 ............................. AAACCGCGCTGAACGTGGGTAAGCCGGCCGGT 134063 29 100.0 32 ............................. AAACCGCGCTGAACGTGGGTAAGCCGGCCGGT 134124 29 100.0 32 ............................. AAACCGCGCTGAACGTGGGTAAGCCGGCCGGT 134185 29 100.0 32 ............................. AAACCGCGCTGAACGTGGGTAAGCCGGCCGGT 134246 29 100.0 32 ............................. GCCGAAGCTGCGGCCGCTTGGGGTATGAAGCT 134307 29 100.0 32 ............................. GCCGAAGCTGCGGCCGCTTGGGGTATGAAGCT 134368 29 100.0 32 ............................. ATGTTGAATACCGACGAGGTATACAACTAGCC 134429 29 100.0 32 ............................. CCTACAGCCAGTGCCTGGCCTGGGTGGGCGAG 134490 29 100.0 32 ............................. AAACCGCGCTGAACGTGGGTAAGCCGGCCGGT 134551 29 100.0 32 ............................. CGCCTTTTACACGTTCCGCCGCCCGATTCGAT 134612 29 100.0 32 ............................. GCATCAGTCACTCACCGCCGTGTAGATCACAT 134673 29 100.0 32 ............................. ATAATCCGGTCATCGCGCTTCACCTTGTAACG 134734 29 100.0 51 ............................. ATAATCCGGTCATCGCGCTTCACGATGGACGCCAAGGCGGCCTCGGCCATG 134814 29 100.0 32 ............................. GACCAGCTTCAAAATCAGGAAACCCAGCGCCT 134875 29 100.0 33 ............................. GACATTCCGGCAGCCCGCTACCCGGAACTGTGC 134937 29 100.0 32 ............................. TCCGCCGACGGCAAGACCGGCATGATCACCTA 134998 29 100.0 32 ............................. GGGTAATTACTACGAATATCCCGGCGCCAGGG 135059 29 100.0 32 ............................. CGAGCTTTCTTTCCTCAATTCTTCTATGTGGT 135120 29 100.0 32 ............................. GGTTGGCCCTCCGGGATCGCGCCCAGCGAGAT 135181 29 100.0 32 ............................. GAAGGCGCTGCTTTCCTGATCGGGCCTTTCCC 135242 29 100.0 32 ............................. GCGGGCACTCGCTTCGACGCCCCGGCCCTGTC 135303 29 100.0 32 ............................. CGGGTTCCAGCGGGTAATGTGTCCATCAGGGG 135364 29 96.6 32 ............................T CCGGGAGCCGGGCGGGCAGCGTTTTAGGGCGG 135425 29 100.0 32 ............................. CGAGCTTTCTTTCCTCAATTCTTCTATGTGGT 135486 29 100.0 32 ............................. CGAGCTTTCTTTCCTCAATTCTTCTATGTGGT 135547 29 100.0 32 ............................. CGGGTGCCGAAGCGAGCCACCAAGGAAATGGC 135608 29 100.0 32 ............................. GGCGCGGATCGGTCGGGCGCCTATGCCATCCA 135669 29 100.0 32 ............................. CAGGCTCTTCATGCCGGCCCAGAGACACCCCG 135730 29 100.0 32 ............................. CTCAGCGCCTGGTGTGGGGTCATCTGCTGCTC 135791 29 100.0 32 ............................. GGAACTCGCCGCGCTGCCGGCGATAGATCGCT 135852 29 96.6 32 .........................G... CGGATTCTCCACCAGCAGCTCATCGCGCAGAT 135913 29 96.6 32 .............G............... GGAACTCGCCGCGCTGCCGGCGATAGATCGCT 135974 29 100.0 32 ............................. TGGCCCAACTGAGGTTTCTACAGGTGGTGTTG 136035 29 100.0 32 ............................. CGGATTCTCCACCAGCAGCTCATCGCGCAGAT 136096 29 96.6 32 .............G............... AGGTTGGGGTTGTTGGTGAGGCCGGCGCTGGT 136157 29 86.2 32 ........T....CT........G..... AACATCCGGCGGATAAACGCCCGGTCGCGGGT 136218 29 86.2 32 .........A..TCT.............. GACTACAAGCCCTCGCACAACTCCTGAGAGGA 136279 29 89.7 32 ........T....CT.............. TCGATGCCGTCAGTGAGCGGCCGCAGGCGGAT 136340 29 79.3 0 .............TT..........GGGC | T,G [136361,136363] ========== ====== ====== ====== ============================= =================================================== ================== 54 29 98.5 32 CTGTTCCCCGCACAGGCGGGGATAAACCG # Left flank : CCGACTGTGCTGCCGGTGGTAAAGAAACTTCTTCAGTCCCTTATGGTGAAAACTCTTAATCATTGACTTCCCCTATCAATGCGGCTCAACTGTATCGTGTAACGCGTCGAGATACAAACAGGAGTGAGTAGAGCAATGGATGTTCAACAGGTGACAAAGTCACAGTTCAAGAGCCGGGCCTCGGAGTTGTTTCGTAAGATTGAGGAATCCGGTTTAACCGTGGTGGTGACCGACCAGGGCAGGCCCGTTGTGGAGGTTCGCAGGTGCCGCAGGAATCAGCGCTCTCCTCTTGAGGTACTCCGAAATAGCGTGGTGGATTTTAAGCGACCGACCGAACCAATCTAATGGGCTCGCAACCTGTCTTTGGTTGCAAAAGAGCATTGACTGCACTGAGATACGAGTTAGATGCTCTTTAAAAATGCGGTCAAAATTCGTACAGGATGTTTGGTGGAAAATCTCGCTCCCGATTTTCCCTTATAAAACAATCATGTACATTTAGA # Right flank : CGAGCCGTGGCGATATAGCAGACCTTTCGTAGCCCGGTTCGCACCTTTACACTGACGCGCGGCCATAGAGCCGGTACATCAATAAACGAAAGGAGGATGCAATGAGGGGGATGTTGCTTGCCCTGGCGTCGTGCGCTGTTTTGGCTGGTTGTAGCACTGCTGGACCCTATGTCACGAACATTTCCAGCGATGGGGATAATGGCGTTAACGTCGAAAAGTGCGCCGTGAAGTTCAATTCCTTCACCGGTACGGTGTCGACCGCTGAATGCACGTCACAGCACATTAGATTGCGCCGGTAGATCGGATTATCAGCGCCACCTGGCCCGTCTCTTCGGCGGGCTTTTGGTTTCTTGGGAGAGCAGAAAAAGACTCAGGCTGAGTCGGTGGCCGAGAAAGATCGGAGGGATTACGCTGCTGGTTCTTGCTGGCCCAGCGCTCGAAAGAGACCCCACGGGCCGGCTCCCGTGGGCAGCGTGCGCACCTGGTGGCCCTAATGCCGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACAGGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCAGGCGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.60,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 148092-148364 **** Predicted by CRISPRDetect 2.4 *** >NZ_ARXR01000003.1 Alcanivorax venustensis ISO4 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 148092 29 100.0 32 ............................. CAGTTCACGAAGCCTCCCGAGATCGGGGAGTA 148153 29 100.0 32 ............................. TGCTCGCGGAACATGGCCAGCCAGGTAGATTC 148214 29 100.0 32 ............................. CCATAGCTGCTCCAGCTGAGCAGAACGATCAA 148275 29 96.6 31 ..........................T.. GTTCGGGAAGGATGCGTGGATATGCTGGCCT 148335 29 72.4 0 .......T.A.TG.C.T........G.T. | T [148359] ========== ====== ====== ====== ============================= ================================ ================== 5 29 93.8 32 GTGTTCCCCGCACCTGCGGGGATAAACCG # Left flank : GCCGCCGGCGGCACCGAGCCTCCTCCGCCACCGGAGGATAGCCAACCACCCGCCATCCCTGAGCCTAAGTCGATGGCCGACAGCGGTCACCGGAGCTAGGCATGAGCATGCTAGTGGTCGTTACAGAGAATGTGCCGCCGCGCCTGCGCGGCCGGCTGGCGGTCTGGCTGCTGGAGATTCGCGCCGGTGTCTATGTCGGCGATGTCAGTAAACGGGTTCGCGAGATGATCTGGGAGCAAGCACAGGCGTTGGTCGACGACGGCAACGTCGCGCTTTGCTGGGCGACCAACACGGAATCCGGGTTCGACTTCCAAACCTGCGGCGAGAACCGCCGCGTTCCTATCGATCACGACGGCCTGCGCTTAGTGTCTTTCTTGCCTGCTGAGTAGGCCTCCTTCCGCAGTTTTCGCTCCTTTAAAATATGGTCATTTATTGATCTAAGTGATTGGTGGATTTTCCTACCTGTATTTTCTTTAGTAAAAACAACCATCTACACTTGG # Right flank : GCTCCAGTGCTGTGCGCAAGGGCTTTTGGCAACGTGGCCCGCACCGTTGTGGGGACATGTGTGCTCTGGAAAGCGAGTGGACTTAAGGAAACGGTTGGGAGGTCGCCCGGGCGTCGACTAGCGATGCCCGGGCAGAAGGCATCCTCTCTCAATTCACCACAGCGGTAAGCACGATCCGGCCCTCACTCACCTCCACGTCCAGCAACGTGTCCGCGCCGAAGCCCGCTTCGCTCAGCCATTGCCCTCTCAAGAGCACGCGGGGTACCGCCGGGGGTGCCGGCTGGAAGCCTTGATAGGGTTTGAGGGGCACGCTGTCGCGGCTGCGGTGTACCTTCAGGGTGCGCCAATAGGGAAATGCCCGGGCCGGTTTTTCGGCGGGGCTTTCGGTGGCGCGATACTCTGGCATAACATTGCGCTCAGCCATAATAGACTCCTCACTAGTCTGTTGTGGTTAGCTGCTTTCGGGTGGGCCAACACCCGGAGGCAGCGCTTATCAATAA # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCTGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACCTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //