Array 1 214499-215246 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACS01000078.1 Providencia alcalifaciens F90-2004 ctgN138L377370C35.9769, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 214499 28 100.0 32 ............................ ACAAAACGCCATGGTTTTCCCTTGACGTAAAC 214559 28 100.0 32 ............................ AGAATGAATCTTTGTTCGCCCATTTGAACATT 214619 28 100.0 32 ............................ GTTATGGGGATTCCCATATCGCTAATTTAATC 214679 28 96.4 32 .............A.............. TAACAATCACCGATGTAATGGCTTCGCTTGGT 214739 28 100.0 32 ............................ AACAAAACAACGGAATTGTAGATATGTGCAAA 214799 28 100.0 32 ............................ GAGCATGTTTAAGTTGACGTTAGAACGTGTAA 214859 28 100.0 32 ............................ TAGCCGAAATTATCTTGTAAAAGGGTTAATCA 214919 28 100.0 32 ............................ ATCAGCTGAATGACTTGGCGAACGCGGAAGTA 214979 28 96.4 32 .................T.......... AAAGTAACGTAGTGATACGTGATGATGGTTGC 215039 28 100.0 32 ............................ TCGATGAGGGCGACGATGATTTTGATAAATCC 215099 28 96.4 32 .............T.............. AAGTGCCTGCAATAAGGTGGTATCAAATGGCT 215159 28 96.4 32 ...............A............ ACTATCCATGTGAATGATTGCTCTTGTTCCGC 215219 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.6 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : GCGGATACACGCACAATTCAGAACGAAACCCGTAAGACTGAGTTGTTACAGACTAACTGGACTGGTGCAACGACGGATTACTATAAAGAGAAGGCAATGTTCCAAGCTTCTCAAGATATTTTTAAAGATCTCAACAGTATGTCGTTATTTGGCGGACGTTGATTGATTTTTACCGCACCCTTTGGCAGTGGCATGTGTACAGGGTGCGGATTTTTCATTCTTCTCGTTATGTTCGTGCTATTTCTTCCTCGTTATTTTCTCGCCCTGTATATTTCTAAGCACCTTTATCTATAGGTTTATTTCTCTTTCACCATTGCTGAATTTCATTTTGTGCGTATGGTTTATTGTATCGATTTGATGATGTATTTGACCTTTATTTTTTGTTCTTTAAAAAATCGCCTGATAAACAACAGGTTATTGAACCACCTAAAATAAAGGGTATTTTCAGCCTTTTGGTGCTAACAGTCTGTTGTGATTTGTTTTATTCCTGATAATTTATA # Right flank : ATCGTTAAGCCACTATTATTTTTCTTAAACTATTAACCACAAGTTTATAGAGGGGAAACTCATCAAGGTAGACATTACAAGGATTGCGAAGTGCCTCGCAAAATGAATCTTCAATTTTTTTAAAGCTTGTAATGTCATTGCTGAGAGACTTAAATGAAATAAATAATTCAAAAAAATTATAGTATTAAGCAAAGGAATATTGACATGGATGACTTTTCCTCATCAGATTTAAAAACTATTTTGCACTCAAAACGTGCCAACATGTATTACCTCGAGCATTGCCGCGTGATGCAAAAAGATGGGCGAGTTCTCTATTTTACGGAAGCGAAAAATGAAAACTTGTATTTCAATATTCCTATTGCGAACACCACCGTTTTACTTTTGGGAACGGGAACTTCGGTCACTCAAGCAGCAATGCGTATGTTATCGCAAGCGGGGGTATTAGTTGGCTTTTGTGGTGGCGGTGGAACACCGCTTTATATGGCAACAGAAATCGAATG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 223953-224400 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACS01000078.1 Providencia alcalifaciens F90-2004 ctgN138L377370C35.9769, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 223953 28 100.0 32 ............................ TCAGTAATGTAAAAAGCATCAGTGCCCAAGAT 224013 28 100.0 32 ............................ TTTAGCGCCAGAAACTGGAGGGTCAAACCTCA 224073 28 100.0 32 ............................ TCAAAGAAGTTCTAGCAACAAACCAACCACAC 224133 28 100.0 32 ............................ AAGTTGATGAGAACGAAGCCTATCTGATTGGT 224193 28 100.0 32 ............................ TATGTGATTTAACCAAAGGATATAACCATTAC 224253 28 100.0 32 ............................ CAGAGAAATACGCACTGAAATTATTAAGCCTG 224313 28 100.0 32 ............................ GAAACAGTTTTAGGAAGTGACGCAAAAGTCAC 224373 28 89.3 0 .......A...C.....T.......... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTGAAATCGATTCAAGCGGTTCCCTCTAATGCTCGACCAGTGAGTTATCTTCGTCAGCAAGTCAAAGGCGCTGCACGTATTGAATCTGATATGCAGAAGAAAGCGGCACTTTGGGCTAAAAAATCAGGTCGAACACTGGGTGAATGCTTAGCGGATTTAGAGAAATCCCGCCCAACTAAGCGTAGTTTACTGCCTTTTATTTGGGTAGAAAGCTTGCATGGTAAGAGTGAGAAAAGGGGAAGTCGTCCATTCCCACTTTTTATTCAGTGTGTTGAAGCGGAACACGTCATTGAGGGGCGTTTTAATTGTTATGGGCTTAGCCAAGTCGTTGAACGTAATAAAATACTGACAACAGTCCCTCATTTTTGACCTTTGTTTTTTGCTCTTTAATAACAAGGCGTAAAATCAATAAGTTACAGTAGTCGGTGAAATAAAGGGTATTTTATTAAGAATGCCCTTAACTGATTGTTGTAACTTATTTTTTGTTTGATATTCTCTA # Right flank : ATTTTAGGTCAATAACGGAAGCATCGGTGCATGTTCACTGCCCCACTGGTAGCTAAAATATCGGTCTCATCTATTAACTTTTATTATTTATGCCGTTGGGTGATTTGTACTAAATTTGGCGGCTGTTATTCTACAAAATAACAGAATAGTGACTGTTGTAAGATAGCTTAGAAATGAACGATAGAACGGGTCTAGATTACTGCCATACAGGCAGCTTTACCGAAACCTGAACAATAGAATGGGTATAATACTGTGTTACCTGACGACAAACATCCTAGACCAACAGATTAATTGGAGCGCACCATGCAGTACGAAATTATGATTAAGATCCTGTGTATGACCTTAATCTTCAAAGTGACAAAATTATCGGGCTCACTCAAACCCACAAGTTAAATATCAGGGATAACTGCTCAAACGCTTGATGGATCAGGCGTTCTGTATAGCGTGGAAGGATAGAAATAATCAGACCTAACATGCTGATACCAATCGTTAATGTTAGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //