Array 1 213684-213956 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHNW01000013.1 Escherichia coli O174:H21 str. 03-3269 contig13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 213684 29 100.0 32 ............................. AGATTTGTAGAAAAATAGTCATTCTCTGCCTG 213745 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 213806 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 213867 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 213928 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 239658-241944 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHNW01000013.1 Escherichia coli O174:H21 str. 03-3269 contig13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 239658 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 239719 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 239780 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 239841 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 239902 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 239963 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 240024 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 240085 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 240146 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 240207 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 240268 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 240330 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 240391 29 96.6 32 ...................A......... GAATACCGATTCATAACGGCGGAAATGTGGAT 240452 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 240513 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 240574 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 240635 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 240696 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 240757 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 240818 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 240879 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 240940 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 241001 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 241062 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 241123 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 241184 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 241245 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 241306 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 241367 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 241428 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 241489 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 241550 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 241611 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 241672 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 241733 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 241794 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 241855 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 241916 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //