Array 1 44514-43289 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LCWA01000025.1 Streptococcus agalactiae strain GB-PW-041 ctg7180000006374, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
     44513	    36	 100.0	    30	....................................	ATTGATTTACACGGTTAAACCGTGTTTTGT 	
     44447	    36	 100.0	    30	....................................	ATACCCGTGTGATCGGAATACCTACTTTTA 	
     44381	    36	 100.0	    30	....................................	GATAATCGACTGACCTATTACCAAAAAATC 	
     44315	    36	 100.0	    30	....................................	CCCTGCACATTCGTTCGTCTTGTTCAGTTT 	
     44249	    36	 100.0	    30	....................................	CCGTTCAATCTGTTCTTGCTTTTGGTCATC 	
     44183	    36	 100.0	    30	....................................	GTTTAATTTTGAATAATATCATGTTTACTC 	
     44117	    36	 100.0	    30	....................................	TATGTCATTGTGATTGTGGGAATACTTGTG 	
     44051	    36	 100.0	    30	....................................	GGCGAACTTGTAACGTTTGACGGTAATTTT 	
     43985	    36	 100.0	    30	....................................	ATTACTTTCAAGATGTCTATGACTATATGC 	
     43919	    36	 100.0	    30	....................................	TATTTCATCATAGAAAATCCTGCTAGTGGT 	
     43853	    36	 100.0	    30	....................................	GCGATGATGGTAAGTCATCATGGACAGCGT 	
     43787	    36	 100.0	    30	....................................	TTTTACACACGATGTCAGATATAATGTCAA 	
     43721	    36	 100.0	    30	....................................	AGTACTGCACTAGGAATTGTAGAGATCAAA 	
     43655	    36	 100.0	    30	....................................	CGTACCATCTATCAATTTACCGCAAGCTGT 	
     43589	    36	 100.0	    31	....................................	TTGCTGCTAGACCCAAACAGTTTATTTTTAG	
     43522	    36	 100.0	    30	....................................	TCCTTTTTTAGATAATGTGCGATCACGGAC 	
     43456	    36	 100.0	    30	....................................	TACTTGACGAATTGAAGATGACGGAATTTA 	
     43390	    36	 100.0	    30	....................................	TGGTTATACATTTACTAATCCATCAGCATT 	
     43324	    36	 100.0	     0	....................................	|                              	
==========	======	======	======	====================================	===============================	==================
        19	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                               	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//