Array 1 31926-30616 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOOV01000006.1 Escherichia coli strain MOD1-EC6896 MOD1-EC6896_6_length_209671_cov_51.8827, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31925 29 100.0 32 ............................. GAGAGAGTCCAGTATCAATCCCGCAATCCGCA 31864 29 100.0 32 ............................. CGTACAGTATAACCTCATCCGGGAGCGTCTCA 31803 29 100.0 32 ............................. CCACCCTCAGATCGCCCTTGTACATCATGTAC 31742 29 100.0 32 ............................. CGCACCGGCTGAGCCAGCAACAACAGAAACCG 31681 29 100.0 32 ............................. ATCCGTACCGGCTGCGCCGGGCTTCGGCGGCT 31620 29 100.0 32 ............................. GGCGTGAATGAGGAATTGAACTTTGCATTCAA 31559 29 100.0 32 ............................. AAAGAGTTGGGACTGATCAGTTGCCAGCAGCC 31498 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 31437 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 31376 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 31315 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 31254 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 31193 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 31132 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 31071 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 31010 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 30949 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 30888 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 30827 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 30766 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 30705 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 30644 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 59426-57628 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOOV01000006.1 Escherichia coli strain MOD1-EC6896 MOD1-EC6896_6_length_209671_cov_51.8827, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 59425 29 100.0 32 ............................. CCAGCGACCGCGACATCTCTCTATATCTCCAG 59364 29 100.0 32 ............................. CTCCCGTTTTTGGGTACATTCGTTTTTGATAT 59303 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 59242 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 59181 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 59120 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 59059 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 58998 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 58937 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 58876 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 58815 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 58754 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 58693 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 58632 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 58571 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 58510 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 58449 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 58388 29 96.6 32 ..A.......................... ATTCTTGATCACGCTTTTACCGAAGTAATGGT 58327 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 58266 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 58205 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 58144 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 58083 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 58022 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 57961 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 57900 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 57839 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 57778 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 57717 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 57656 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTATCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //