Array 1 997019-999121 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP037917.1 Salmonella enterica subsp. enterica serovar Kentucky strain K13SK002 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 997019 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 997080 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 997141 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 997202 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 997264 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 997325 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 997386 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 997447 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 997508 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 997569 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 997630 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 997691 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 997752 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 997813 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 997874 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 997935 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 997996 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 998057 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 998118 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 998179 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 998240 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 998301 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 998362 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 998423 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 998484 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 998545 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 998606 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 998667 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 998728 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 998789 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 998850 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 998911 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 998972 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 999033 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 999094 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1016754-1018735 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP037917.1 Salmonella enterica subsp. enterica serovar Kentucky strain K13SK002 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1016754 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 1016815 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 1016876 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 1016937 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 1016998 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 1017059 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 1017120 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 1017181 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 1017242 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 1017303 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 1017364 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 1017425 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 1017486 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 1017547 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 1017608 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 1017669 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 1017730 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 1017791 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 1017852 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 1017913 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 1017974 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 1018035 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 1018096 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 1018157 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 1018218 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 1018279 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 1018340 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 1018401 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 1018462 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 1018523 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 1018584 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 1018645 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 1018706 29 100.0 0 ............................. | A [1018733] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //