Array 1 295319-295882 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073349.1 Porphyromonas gingivalis strain LyG-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 295319 36 100.0 30 .................................... AGCCCCGTGTTTCCGGCAGTCTCTCGAATA 295385 36 100.0 30 .................................... ATAAACCAACTATGGGCCAGTCTTGGAAAT 295451 36 100.0 30 .................................... ATAGGAAATAAATACCTGTACAGCCTAAAA 295517 36 100.0 30 .................................... GGCGTTACAACAGACCCTATTTGACAATCC 295583 36 100.0 30 .................................... GGCATTACAACAGACCCTATTTGACAATCC 295649 36 100.0 30 .................................... AACGTAACAGTCTTTGTAGATTACTTGGAA 295715 36 100.0 30 .................................... GATAACACTTTTTCAGTGTATTCTGTAGAA 295781 36 100.0 30 .................................... ATAGGAAATAAATACCTGTACAGCCTAAAA 295847 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : TATCGTTTTCATTTTGTATATAAATCATTTTTAATTCATATATAAATCGATTGCGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGGCAGCTCAAAAGGCCTTTAGCGGAGGTATAAATAAAGAGGCACCCACCGAGTTCGTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAGGCTCTACCGCTCATACAGCAGGCTTGTATCAGCCATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGGAAGAGAAGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCACTCCCCGGTACAAATTCACCGAAGAGGGGAGCAGCTTGTCCACCTGCAAATGTAGCGAAAAAGCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CCTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTACGTTCCTGCCGGTTCGCACTCAAAAGTTCAACGTTCGCTCCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 1424540-1423844 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073349.1 Porphyromonas gingivalis strain LyG-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1424539 36 100.0 30 .................................... TCCGATTTTCTTCAGTGGCCGCAATTCCTG 1424473 36 100.0 30 .................................... TAACACAGATATTTGGTTTATTATAAGCGT 1424407 36 100.0 30 .................................... CGTCAGTATATCACACGAGTATTCATCGAT 1424341 36 100.0 30 .................................... AGCGAATCAAAGTTAAGGCTTAGGGTATAT 1424275 36 100.0 30 .................................... CTGCTAATCTTTCCATTTTGTTATTCTGAA 1424209 36 100.0 30 .................................... CTGCTAATCTTTCCATTTTGTTATTCTGAA 1424143 36 100.0 30 .................................... TCTCAAGCCCTGCTCTCCGCATCAAAGGAT 1424077 36 100.0 30 .................................... TTCGGGAGATCTTAAACTTTTCATCTTTTA 1424011 36 100.0 30 .................................... AGACTAAAAAAATGAAAGAAATTATCAAAG 1423945 36 100.0 30 .................................... TATATGCAAGTAGAACAGCGATGATTATTA 1423879 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Left flank : AAAGCTACGTTGGATGAAGTCAAGACTTTGTTGGGCGAATATGATCGCTGCCGCATCAAAATCTTCGATTGGGCATTTGCACTCGAAGGAGCCATCATGTCTGATCGCGACTTGAAGCCGTATTTGCACGAGTCGTCGAGCAGGGAGGGTAAGAGCGGAGAGCATTCTACACTGGTGAAGATGCTGGTGGAGAAGAAAGGCTGTCTGACTCCTGACGAAAGCCAATACCTGATTCTGATTCGCAACAAGGCTGCTCACAACCAATTTCCCTGCGCTGCAGAAATACCTCTTATTTACCGAGATGTGAGTGCAAAGGTCGGTAGCATTGAGGGATCTTCTGCCAAAGATCTGCCGGAAGGTAGTTCTCTGGTAGATTCATTATGGAAAAAATACGAAATGATAATTCGGAAAATTCTTCCGATTCTCGACCCTGAAAATAGATTTTTTGGAAAGCTTTTGAATAATATGTCTCAACCTATCAATGACTTATAAAGGGTCAG # Right flank : TATTATTCCGAAAGGAGAAAGAGGGGCAGTTGTGCTGTTGATGGAGAAGTATTCCTAAATTAGCGATCGCTAAAGTGATGGAAAATGGATAGGGGGATCGTGTTCGGAGGAGAGGGTTGTAGCCGACAGTGTTTGTGTGCAGCTATCCATTCGATCGGGAGGCCTTTCGTTCTCTTCCTTGGCTTTTGTCTGTAAATCTCGATTCTTTTAACTCATATAATTGTCTGTTCCTATCAAACGCTCTCATCTCCTTATCAGTGCTGCTTCATCGGGTGGTGGAAAGACTACTTTCACGCTCGGATTGCTACGATTGCTTCGAAGGCGCGGTCTCAAAGTGCAGCCTTTCAAATGCGGTCCCGACTATATCGATCCTAAGTATCACCGCCTTGCATGCGGAACGGAAACGGTGAATCTGGATGCTTTCATGATGAGCCGGGAGCATATCGCCCGACTTTATGATCGCTACGGCAGTGAAGCCGATGTTTCCATCGTAGAGGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 3 1765177-1764600 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073349.1 Porphyromonas gingivalis strain LyG-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 1765176 46 100.0 30 .............................................. TTGAGTGATCTAATGAATCTTGGGACAGAT 1765100 46 100.0 30 .............................................. AATCAACTTAGGAAGATTTTCCATAACGAA 1765024 46 100.0 29 .............................................. TAGATTCCAAATTTTTTATCTTAAATTTT 1764949 46 100.0 30 .............................................. GAAAAAGAAGTCGAACAGTTGCGAACCATC 1764873 46 100.0 30 .............................................. TCTCTGGTCGTATCGTACAGCGAACACTGA 1764797 46 100.0 30 .............................................. AGAGCGGTACGGGATTCGCATCTACGACCG 1764721 46 100.0 30 .............................................. GGTGATGTTATTGAATTAGATGGAATAAAA 1764645 46 91.3 0 .................C.T...............T......A... | ========== ====== ====== ====== ============================================== ============================== ================== 8 46 98.9 30 GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Left flank : ATGAGCCATTACAGATCCAGATATTCAGCCTATAGAAGTATGTGGGTAATGGTATTCTTCGATCTACCTACGGAAACTGCAGCCGACAGGAAACGTGCAGCAATCTTTCGGAAAAATCTGATTAAAGATGGTTTCGAGATGTTCCAATTTTCTATCTATATCAGACACTGTGCAAGTAGAGAGAATGCAGAAACACATTGCCGACGGGTCCGTTCTGCTATTCCTGAAAAGGGCAAAATAGGTTTGATGACAATCACAGACAAACAATTTTCAGCCATGGAGATCATTTGTGGGAAAGGAAGAGAGTATTATCAGCCACCCCTCCAGCTTGAACTTTTTTAAATATATTCTATCATCTTTTGTGGAATTAGTGCTTTTCGTCTGGGGCATAGAAATTAAAAAGCCGAGAGAAATCTCGGCTTTTCAGCTACGCACAGTTGTTTTTTTCTTACTCACAATCACCCTCTATGTCCTGTATTACAGGTGATTACGGGGATTCT # Right flank : AGGCCAGCTGGGGTGTGACGGGGTATAACGTCTATGACTACGAAAAAGACGGGAAAACTTACAGAGTCGGGTTCGAGGTAATAGAGAAAGAGGCTGCGAGGTGGAAGCAGCCGTATTATGTAAAAAAGAAAAACTGATCAGGGTCAGTTACGTGCTAAAAAAATCGCCCGAATTCGCGTCCCTAATCAGCTTTCTGTACTGCAAATATAAACAAAGTTTCTGAAGCTGTGTTGCAACAACATTACTAAATCTGAAAGCTATTCCCTGTGAAAAAAGGGAGACCACGAAAATAATAATCTGCTCAAAAATCATGCGCCAAAAAAGTTTTCAACAACGAAGACGAGTTTGGAACGATTCCAAATAAGTATCTGTAGAGAGGAGAAAAGCAAGGGAAAAGTGCAGGGAAAAGGAACTGCCATAGATCGAAATTCCACTTAAAACAAGTCGGACAACAATCTGTATATAAAGCGTTTTCAATTTGTATACAAATCGTTTTCATT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //