Array 1 175679-178391 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXL01000005.1 Salmonella enterica subsp. enterica serovar Havana strain BCW_2850 NODE_5_length_302988_cov_0.5189, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 175679 29 100.0 32 ............................. TCCTCGCCGAGCGCGTGCCGCAGGTGCTGTGG 175740 29 100.0 32 ............................. CGGTTAGCAAAATATCGGGCGGATACTGGATT 175801 29 96.6 32 ............................C CTCTCATTAAATATTTGGCGTAATCACGATCC 175862 29 100.0 32 ............................. GACTGGAATTAATTGGACCGTCTCTCACTGGT 175923 29 100.0 32 ............................. ATTTCCCAGTGGTTCACACCAGCCCCCGTCGT 175984 29 100.0 32 ............................. CAGATTTATTTCCCGCGCGGGCAGGCGCTGGA 176045 29 100.0 32 ............................. GCCCAATTAATTTTTTAGTGTCGGCCAGATAA 176106 29 100.0 32 ............................. TCTGGCCCGGTTCTCCTGTCGGTACGAAACGG 176167 29 100.0 32 ............................. AAATTGGAGACTGTGGGAGTGATCTCCATCGG 176228 29 100.0 32 ............................. GGACTCCATACCCCGTAACGTTGCCCGCTGGA 176289 29 100.0 32 ............................. TCATTAACGCGGACGCCGACGAAATCAACGTT 176350 29 100.0 32 ............................. GATTTTGATATTCACTGCCCACCGGTGGGGAT 176411 29 100.0 32 ............................. CATTCAATACGGAGGGTATCGATGGATATCAA 176472 29 100.0 32 ............................. AACTTTCGTCAAACTGGATCGAAGGGCCACTT 176533 29 100.0 32 ............................. CGAACCTTGATTCAGTAATTGCTGGCTGGTTC 176594 29 100.0 32 ............................. ACGCTGGTCAGCTTGGTGAGTTTGTTACTACT 176655 29 100.0 32 ............................. ACAATCAGGATCATTACTATTGGCTCAATATT 176716 29 96.6 32 ............................A CCCCGCCGGTCACAAAAATATAGTTCGTTGTC 176777 29 96.6 32 ............................A AAACGAAGCGCAGGATGACTCAATACATATCC 176838 29 100.0 32 ............................. ATAACAGAGGGGATCACTGACTGGGTTATCGA 176899 29 100.0 32 ............................. TATAACGTCACATTGCGGCGTAAACATATCCG 176960 29 100.0 32 ............................. GAGTGTACGAAATGTCCAGACAATCGAAATAC 177021 29 100.0 32 ............................. TCCAGTACGTGACCCACGCGCGCGGCGCCGAC 177082 29 100.0 33 ............................. ATAATTACTCACGAATTAGCTGGAGAACGGTGC 177144 29 100.0 32 ............................. AGTTCGGTCACCTGAATGACGTGCGGGAATAC 177205 29 100.0 32 ............................. GTACATCATTATCACGGCTCCCCAATATGGGG 177266 29 100.0 32 ............................. TTATTTTCAAGGCGGAGCCTTCACCCACTTCC 177327 29 100.0 32 ............................. GTATCGCCAGGGTTGTTAAGGCTGTACGCGAA 177388 29 100.0 32 ............................. GCAGTGAGTAAACCGGATCGGTTTCCCCCTGC 177449 29 100.0 32 ............................. CTCAGGCGTTTCATCGTGCGGCATCCCGGAGA 177510 29 100.0 32 ............................. GATGCATGATGCTCGTGATGGGATTCACTGGC 177571 29 100.0 32 ............................. TTTTCAGTGCATATAAAACATTTGAATCAATA 177632 29 100.0 32 ............................. ATCCGTGACGGTTACCGTGTGGGCCGGTTCGT 177693 29 100.0 32 ............................. CGAATCCCAGGAAAGTCAGTACCGCCGAAAAG 177754 29 100.0 32 ............................. CCTGCTGTAAGGCGCTTATTGCCCGTGCTGCC 177815 29 100.0 32 ............................. CCGTCCAGATTATTGGCGTCGCTTGATAGCGG 177876 29 100.0 32 ............................. AAAATTTTCGCCTCTCGTTTTAATTATTGCTA 177937 29 100.0 31 ............................. CGGTTATATCGAACATTTTTCAGACTCGTAG 177997 29 100.0 32 ............................. AAACAGGACTCCCGGCAGATGAGTCGCCTGTT 178058 29 100.0 32 ............................. GTGCACTCACTATTTGCAGGAACCGTGACCGC 178119 29 100.0 32 ............................. TGTTGATGATGTATCGGCCATCGCGCCGGGTT 178180 29 100.0 32 ............................. GCTGACTGCGGAGCTGGAATCCAGAGGGTTAT 178241 29 100.0 33 ............................. TAGTCCAGCAGTTCGTCACCCTCTCCACCCTGC 178303 29 100.0 32 ............................. GGGCAGATCGCTATATTTAGCCCGCAACTCAT 178364 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 45 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAATGCATAAATATTTAAATATCGCCTGATGCACTACTAATCTTACAGACGGCGTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGGAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAGTGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 194988-196909 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXL01000005.1 Salmonella enterica subsp. enterica serovar Havana strain BCW_2850 NODE_5_length_302988_cov_0.5189, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 194988 29 100.0 32 ............................. CTATTGCCGCCGGGGTGATCTCCCTCTATATC 195049 29 100.0 32 ............................. GCGGAGGCGTTCATCAGAGCCAACAAAACCTC 195110 29 100.0 32 ............................. GAGCGGCATCCAGAACACCCTTCTCAGTGAGT 195171 29 100.0 32 ............................. GCCGGTGCTGAGTTACAGTGTTTTGGTGAATT 195232 29 100.0 32 ............................. TCACCAGCTCGATAATCTTCAGTTGCTACAAA 195293 29 100.0 32 ............................. CAAATGGGGCAGGACATACTTGATATGTCCAC 195354 29 100.0 32 ............................. GTTGAATGCGCCGAGCGTGGCGCTGATAGTCG 195415 29 100.0 32 ............................. TAAAACGTGTTACCCGCTGTAAACGTGTTTGA 195476 29 100.0 32 ............................. ACGCCAAATCCCTCGCAATAGAAACGCTGTGC 195537 29 100.0 32 ............................. GTTATGTCGGCCAAACAGAAATAACCGAAGAG 195598 29 100.0 32 ............................. CCGTATCGATCGACAGCCTGATTGATCGCGAA 195659 29 100.0 32 ............................. GGCGTATACAGGGTGGATTTGTATTACGCCCT 195720 29 100.0 32 ............................. CCGTTGCCAGCGTCAATGGGGCGCAGCCTGAC 195781 29 100.0 32 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTG 195842 29 100.0 32 ............................. CCTGCACCAAATAAACTGGCGGGCGCTCTGGT 195903 29 100.0 32 ............................. AATTTGAAGTGCTGGCAAGGCGCGCCATTGCT 195964 29 100.0 32 ............................. GGGGACTTTATAACGCTTGAGAGGTCCAGCCA 196025 29 100.0 32 ............................. TCCGCAAACAGCGCAATATTGATTTACTCGCA 196086 29 100.0 32 ............................. TTTATCTTGATGGGCTTCGCGTGCCGCACGTA 196147 29 96.6 32 ............................A TCCTGAATAATCAGAATGTTGAAAATATAAAC 196208 29 96.6 32 ......T...................... GACACCTACACATTGAACAGCAAAAAACGGGT 196269 29 100.0 32 ............................. CGGCAAACGCCAGTTCAATAGCAGTATTTGCG 196330 29 100.0 32 ............................. ACATCTCCACTTACTAAACCGGCTCGGCCTGA 196391 29 100.0 32 ............................. CGATCGCCCCTTGTTCAATGATTGTGATCATT 196452 29 100.0 32 ............................. CACAATAAACGGCATCAGCTATGGGTTGATAG 196513 29 100.0 32 ............................. ACGCTGGTAGAGAGCTCGCCGGGGCGCGATGT 196574 29 100.0 32 ............................. GCCGCGCGAGAAACAGAGCGTAAAACAGCGGT 196635 29 100.0 32 ............................. ACTCGCTAAAGTTGCGCTCAACGCAAACAGCC 196696 29 100.0 33 ............................. ATTTAACGCGTTTTTTGGGTTTTCCCCTTATGC 196758 29 100.0 32 ............................. ATGAGTATCTGTACGGCGGGCGCATTCGTGGT 196819 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 196880 29 93.1 0 A...........T................ | A [196906] ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //