Array 1 94669-96257 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOL010000011.1 Vibrio cholerae strain C1F.2 Scaffold11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 94669 28 100.0 32 ............................ GCACTCATCAAGCACAATTAGACCGTCCTTAG 94729 28 100.0 32 ............................ AGCCGTCCGCCGCAGTCATCAGCTTTGCTGAT 94789 28 100.0 32 ............................ ATTGCTCTACAGAGTGGCCCATGTGATCACTC 94849 28 100.0 32 ............................ AGTTCCCAGCCGCCGACGCCCAAGGGGCGCTA 94909 28 100.0 32 ............................ TGTATCGGTAGATCGTAATCGTCCGAAAATCT 94969 28 100.0 32 ............................ TTTATACGTCCACTCGGCTGGACAAGGCACTC 95029 28 100.0 32 ............................ ACCTGCGCACTGATGCTGTGCTGAGTCTCTGG 95089 28 100.0 32 ............................ CGACACAAAGAAAGGTCATTACTGATGCGATC 95149 28 100.0 32 ............................ TTATCCGATGCCTGCTTTTGCTCTTGATTTAT 95209 28 100.0 32 ............................ TAATACGCACTGAGAAACTAGCTCATTAAACT 95269 28 100.0 32 ............................ AGTTAAAAGCAGGCGAACTAGAGCTGTCAATG 95329 28 100.0 32 ............................ CAATAGAACTCTATATCAGGCTTTCACAGAAC 95389 28 100.0 32 ............................ TGATTAAGCGACAAACCGTGAGACCATTCGAA 95449 28 100.0 32 ............................ GTACTATCAACAAACAGGGCGCTGCGAGCGTC 95509 28 100.0 32 ............................ TTACAAGTCTCCAAGTAACCAAAGCCTGCAAA 95569 28 100.0 32 ............................ TTGAACAGTTACCTGACCAGCAAACAAAGCTT 95629 28 100.0 33 ............................ CTCTTGAATGTCGCTTAGGAAATCAATCAGCTC 95690 28 100.0 32 ............................ TAAGCCCAGCCAACGCCACCAAAACACTCGCT 95750 28 100.0 32 ............................ TAAATCAAAACCTGCACCGTTACCCCAAGGTT 95810 28 100.0 32 ............................ GTTCTCGGTGATCTCGGGGATACCTTGCATTC 95870 28 100.0 32 ............................ TATTGTGCGTCATCGCGTTATCATCGTTATCC 95930 28 100.0 32 ............................ AGTGCGGCCAACTGCGATTGACTCGGATCATT 95990 28 100.0 32 ............................ TTAAAGTCTCTTACCGATCTACGCACCAAGGT 96050 28 100.0 32 ............................ TTGCGGGGAAGGCTTTCGGCCTTCTTGGGTTA 96110 28 100.0 32 ............................ TAAAAGCAGAAGAAATGGGGCGCTTGGGTGAC 96170 28 100.0 32 ............................ TGATCCTACAGTTCACAAGACAGAAGTCGCTG 96230 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCATTGTGCGCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAGAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACATTCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : ATCTGCTTTCCCCATCATATGGGTTATCTATGTGATGGGGATTCGCTCGCTAGCGGCCTGCCTGTGAATCCAAGTGGTATGTGTCTGGTACGCAAGGTTTTTCTGTACCCCAAGCTGTGCCCAGAGCGATTGGTTTATAAAGGAAATCCTGTTGATCTCCTTATCTAATGCGCTCTAGCATCACACCTGCTTCCATATGGTGGGTGTAAGGGAATTGGTCGAAGAGAGCAAAACGCACCACTTGATGGGTTTCCCCCAAGACTTGTAAATTCTCTTGCAGCGTTTCTGGGTTACAAGAGATGTAGATAATGCGCTCATAACCTTGCACCATTTTACAGGTGTCGATATCCATGCCAGAGCGTGGTGGGTCGACAAAAATAGTGTTGCAGCGGTAGCTTTGTAGATCGACTCCCGCATCCTTCAAGCGATTGAATTCGCGTTTACCTTCCATCGCCTGAGTAAACTCTTCTGCTGACATGCGAATGATCTGCACGTTGCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1181-792 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOL010000045.1 Vibrio cholerae strain C1F.2 Scaffold45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1180 28 100.0 33 ............................ CAATAGAGCCAAGTGTCAAAGTGGTTGTGTATT 1119 28 100.0 32 ............................ TCTTGAGGCTCACTTGCTTTATAGTTCCACTT 1059 28 100.0 32 ............................ GAGCTTGAAAAGTCAGAGCTTGCGCGAACAAT 999 28 100.0 32 ............................ AAAAAGCTCGTTTAAGGTCGGCACGGTTAAAA 939 28 100.0 32 ............................ TGCTCCGTTTAAACAATTGTTTCCATTAGAAA 879 28 100.0 32 ............................ TCGATCGCATGAGCAATAAGCATGTGATAAGC 819 28 92.9 0 ........................A.G. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTTCCACACAGCAAGTTTGGTTTCACAAAAGGCTGCATCATCGCTGTGATCTTGCTTTCTTTGTCGCGGACTCTTAATCGTGGCCAACTTAGCCTAGATCGTTTTAAGTTTTGGCAGCCAACTTCACAGCTTTTGGCGTTGGACGTGGGTTTGTGAGATGCTTCTGCGTAAAATGGCTTTCAAATAAAGGTGTTTAAAAATCATTATTAAACAATAAGCTACGAAGCTAACAAACGCCTCAAGAGGGACTGTCAACGCGTAGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTACGGTTGTTGTGGTTATGTTTAGTGGTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATATTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAAAAATTTGATGTAATTACCATTATTAACAATAGGTTACTGATAAAGTTTCATA # Right flank : TATTGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTTAAGAGGGATTCGCAACGCGTGGCATTTTCGTTATGCGTTGATTTTATTAGTTTTTAGTGTGATGCGGTGAGTTTTTCGTTGCGTTGCTCACCCCTTAACGCGGCGTTATGCTTAATCCATAAAAATCAGTAGGTTGTGTTATCGATTTCTTTGGCATTTCGTTCAGGTTTTGTCGGCAATTCAATATTGTTTGTCGCTGCCTAATGAAGCGGCAATGTGTCTGGCGCTGTAAATTCTGAGTTGTTGCCTCATTAGGTTTTTGAGTCTGCGCGAGGTTAGACTTGTTGGCTCAAGTCGCTTTGAGCAGTCTGGTGCCTTTACTTACAGGCTTAAAGTCTGTCGGCAATTGAATATTGTTTTGCGCTGCCTAATGAAACGGCAATGTGTCTGTCGCTGTAAATTTCAGTGTCATTGCCTCATTGAGTTGTTGTGCCCATGCGTGGTGAGTTGGTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 882-3193 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOL010000030.1 Vibrio cholerae strain C1F.2 Scaffold30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 882 28 100.0 32 ............................ ACCACGGGCATGATGTTCATTTAGTCACTCAA 942 28 100.0 32 ............................ ATAAAGAGGAAGACCAGAAAAATCAACACCGG 1002 28 100.0 32 ............................ ATTGGAGGTTATCGAGCAACGATTTGATATTA 1062 28 100.0 32 ............................ TCACGAACGAGTGAGCCAATTACGGTATTAAC 1122 28 100.0 32 ............................ CAAACGGAACCCTCTACAACCAATCTAATGTC 1182 28 100.0 32 ............................ TGTTGCGTGTAAAGTGCGGCAGCGCAAAGGCT 1242 28 100.0 32 ............................ GTATCAAAGAGCACGGTGAGCAGACTAAACAT 1302 28 100.0 32 ............................ ATTAACGATTCGGCTTGATGCAACAAAAGGCG 1362 28 100.0 32 ............................ AACCCAATCGGTAAATGTCTCGCGAACGTAAT 1422 28 100.0 32 ............................ GATTGCAGATCGGTTTGATAGGCCTTGGTGAT 1482 28 100.0 32 ............................ TGGAGCTACTGGTGCAATCAAAGCGTGCGCAC 1542 28 100.0 32 ............................ AGCGAGCTGCACCGCATACCACTCACAAAAAC 1602 28 100.0 32 ............................ GCGTACCATGTGTATCCTGTTGCGCCATTTCC 1662 28 100.0 32 ............................ AGACGAAGATATTGTCGAGAACGCACCAACAC 1722 28 100.0 33 ............................ AATCATCGTAAGTCCAGATATCAAGGCCTGAAT 1783 28 100.0 33 ............................ CAGTTCTGGCGCAGTGTGTTCACGTCCCATTTA 1844 28 100.0 32 ............................ AGTGAATGAGTTATGGGCTCAAGTTGAAGAAT 1904 28 100.0 32 ............................ ATTGCGCAATGGCTTATTGAAATCGAGTACAG 1964 28 100.0 32 ............................ GTGCTGAAAGATGGCTCAGAAGTTTGGCTGGC 2024 28 100.0 32 ............................ GTGAAGAGGCGATGGCCGCTGAAGCTTTGTTT 2084 28 100.0 33 ............................ TGGGGGCAGGTAAAGTGGAGAAAAGATCCGGAA 2145 28 100.0 32 ............................ TTCTGGAACTTCGCAGTTGTAGTATTCACGGC 2205 28 100.0 32 ............................ AATTTCCAGCGCTGCATCAAGTGACATTACTT 2265 28 100.0 32 ............................ AAGCTTGAGACTGGTAAATATCAAGACCATTC 2325 28 100.0 32 ............................ TTTTGCGATTTTCCTTGATTGGTCATTTGGCC 2385 28 100.0 32 ............................ TTGATAGCCATGCTTTTGCAAAAATCGTTTTC 2445 28 100.0 32 ............................ TTTAATGGTTTTCTTTGCCGTTCTTAGCCCTA 2505 28 100.0 32 ............................ TTTTGTTTTTGTTTCCAATACGTCAGGCGAAG 2565 28 100.0 33 ............................ AAGACATTGCAAACAAGCACGTGGGCGATCTAT 2626 28 100.0 32 ............................ ACCGTCATCTTCACTGAACATGATGGTGTTGA 2686 28 100.0 32 ............................ TTTAGGGAAGTAATATTGCAAACCGCCCGTGT 2746 28 100.0 32 ............................ ACTTACAAGTCAGCTCGCACGACGCCTCAGCC 2806 28 100.0 32 ............................ ACTTCGACGATTAGGTTAGGCTCGCCGTGGAT 2866 28 100.0 32 ............................ GTCATGTGCATTTTTATAATGCGACTGGTGGT 2926 28 100.0 32 ............................ TGTTACGGCAGCGAAGATTGGTGATTCGGCTG 2986 28 100.0 32 ............................ TACAACTAACTTTTTAAGCTTCTTTGCTGCTT 3046 28 100.0 32 ............................ TGTATCTTTGAGAACGCCACACTCAACCAGCT 3106 28 100.0 32 ............................ ATCCGGCACAGTCGAAGAAATCGGCTGATTAA 3166 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 39 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTCAAGCTTATCCATCATGATCTCGTAGGTGCTTGCAGGGACGCAGTAGAAAGCCGGCTCATTTCGGTTGAGTACAGCAACAGGAGCACCGAAGGCGCTAGTTGCAACTTTCATTGGGTTTGCTTTAAATTCGGTAATGCTTGCTGCAACATCAGCTAGGATTCTAGTGGTCATTTAATCAGTCCTTTATGTGGTCTTTAATTGGGTCATTATAGTCTTGAAAATGCAGTTTAACAAACGCCTCAAGAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCAATGAGCCGTAGTGGTTACGGTTGTTGTGTTTGAGTTTAGTGTTATGCGTTGTCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTGTTGATTTATATTAATAATAAATTGAGTAAAAAATAAAAGGTTGTTTTGAGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : TATTTATAACTTAGGCATTTGGGATCGGCCAGTTAACAAACGCCTTAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTATGGTTGTTGTGATTGAGTTTAGTGGTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTAGCTTCTTAAAGGCTAAAATCATCAAAATCCCAACTTCTTGTTCAGAAAAATCAGCTTTTAGTGTTCAAATTGCACAATTTGGCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //