Array 1 28525-27968 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JOIJ01000025.1 Prauserella rugosa strain NRRL B-2295 contig25.1, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                                                          	Insertion/Deletion
==========	======	======	======	=============================	=========================================================================	==================
     28524	    29	 100.0	    32	.............................	AACCGATGAGCACGACGTTCACCCCTGCCCCT                                         	
     28463	    29	 100.0	    32	.............................	GGACATCGGAGGGGAACACGATGAACGCCTAC                                         	
     28402	    29	 100.0	    32	.............................	GAAATGGCGATGATGTAGATGCACGCGCGAAC                                         	
     28341	    29	  96.6	    32	............................G	TCCACACCGGACTTGACCACCCTTCCCGGTAA                                         	
     28280	    29	  96.6	    32	............................G	GGACTGACGTGATCAACGGACACCGACACGAC                                         	
     28219	    28	  93.1	    32	.................-..........G	TGGGACTTGATCTCGTTCGCGAGCGGGCCGTT                                         	
     28159	    29	 100.0	    32	.............................	GAGGACTGGTACGGCGCCACCGACGACGCCGT                                         	
     28098	    29	  93.1	    73	.......................T....G	GCCCGGCCAGACGAGCGGGAGGGGGTGATCCAGGCCGGTGCGCCAACGCCCGATCCTTTTGACGAGCGGCCGG	
     27996	    29	  65.5	     0	....G......G.....ATT....GCATA	|                                                                        	
==========	======	======	======	=============================	=========================================================================	==================
         9	    29	  93.9	    37	GTGCTCCCCGCACGAGCGGGGGTGATCCC	                                                                         	       

# Left flank :   CGGCGAAGGGCGACGTCGCCGAGCCGGGGCGGAACGTGCGCGCGAAGACCGGACTGAACCGGTCGATCCTCGACGCGGCGCCGGGCGAGTTCCGACGTCAGCTCGACTACAAAACGCCCTGGTACGGGTCCACGGTCGCGGTGTGCGACCGGTGGGCGCCGACCAGCAAGACATGCTCGGCATGCGGGGCAGCGAAAACCAAGCTGCCTTTGTCCGAGCGGGTCTACACCTGCAACCACTGCGGGTTCGTGTGTGATCGGGACGTCAACGCGGCACGCAACATCGCCGCAATGGCTGTCCCCGTCGACCCTGGAGGAGGGCGACGCTAAACCGCGCGTGGAGCGGGTGTAAGTCCCCGCCGGCCCTTGGCTGGTGTGGCTCTCCGCGGCGAAGCGCGCAGCCCAGAGCACTGCTCCGGGCACCGTAGGAGAGTGATCTCCTGCTCACCCCTCCTAACTCAATAGCGGGGATACCGACGGTATGAGCGCAGGTCAGGAAGT
# Right flank :  TCAGGGCCTGATAAATCTGCGATCCCGGTATAGCGCCCTGTTCGCGCTGTCGCTCACGCCGCGACGTATCAGGGCCTGATATCTGTGCCGACGCTGCACGCGACAGTGGCAGGATGCCCGCTATGGCTGCCAGCACATCGTCACAACTCTCTCGGACTGTTGCTGTCGCGAATCAGAAAGGTGGGGTGGGCAAGTCCACCTCGACCATCTGCCTTGCCCGCGCCGCACACATCGCCGGACACCGAACTCTTGTCGTCGACCTGGACGCCCAGGCCAACACAACCTCCGACCTCGCTGCCGAGCCTGTGCCGGCAGATACCGTGACCATCGCCGACGCGCTCGTCGGTGACGTCGAACTCGCCGACGTCGTCGTGCCTGCAATCTGGGAGCGCGTCATGCTCGCGCCCGCCGGTGCGACGCTGTCGGTGGCCTTGGACCAGCTCGCCTCGGTCGTAGCGCGCGAGATGCGACTCCGCAAGCTCATCAAGTCCGTGACGACC

# Questionable array : NO	 Score: 5.41
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.35, 8:1, 9:0.81,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGCTCCCCGCACGAGCGGGGGTGATCCC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [4,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGCTCCCCGCGCGAGCGGGGGTGGTCCG with 96% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-12.90,-13.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [10-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,4.91   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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