Array 1 774-2273 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAMA01000006.1 Neisseria meningitidis strain Neisseria meningitidis isolate 99662, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 774 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 840 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 906 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 972 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 1038 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 1104 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 1170 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 1248 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 1314 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 1380 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 1446 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 1512 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 1578 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 1644 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 1710 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 1776 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 1842 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 1908 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 1974 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 2040 36 100.0 30 .................................... CAAAGCTGCGGTATGTCGGGATTGTCTTCA 2106 36 100.0 30 .................................... GTTGCACTATTATTCATTGCATCATCATTA 2172 36 100.0 30 .................................... TGCGGTTTGCAACCAAACGCATATATTTTT 2238 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 23 36 99.9 31 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //