Array 1 181-407 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLOO010000048.1 Caldibacillus hisashii strain N61 No61_ctg048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 181 30 100.0 36 .............................. ACGGGAAAGACGGGCAGGATGGAAAATCATCATATC 247 30 100.0 36 .............................. TTTTTCCGAGGTACTCACTTTCATAGGTGTTAGTGT 313 30 100.0 35 .............................. GCCTTTTTCTTCTTTCTTCTACTTGCCTTGCGTAC 378 30 96.7 0 ........T..................... | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 99.2 36 GTTTATATCTTACCTATGAGGAATTGAAAC # Left flank : ATATTCATAGAAACCCAGAAATTATAAACAACTATTTGCCTTGGTCAAAAACGATCCAAGCAGAATGTGTAAAATAACCGTAAATCTGATTAAAAAATCATGGTTTTACGGTTATTTGTCGTACGTACCGTGAAGGTACGTTTATTTTTTTATTTCGGGCTTACAGTATAAGCATTCTATG # Right flank : CTGATCGCTTTTCATTGTTATATTCATCACTCCTTGTTTAAAGCCGGAACAGCAAAGCCGCTATCCCCACGAAGAAACAAGGTCGTTTCCGGGAATATTTCGTTATAATGTTCAATTAAAGGTTGAATAAACTCCACCACACCATTCGATGTATAGACATTTCCCGGACGGAGCTGTGCCAAAGTCACCAGTCGCCCCATCAAAAGCGACCAATGGATGAAAACCCATCGTCCTGTAATGGGTATTATATGACGAGGATTCTTGATCCCCATACGTATCTGAATGAGTGGAATCTAAGTTAATAAATAACGACTTTGATTGTCGAGCAAGATGAATTTTATCAAGCAATTCTTGGTTCGCTTGATTTAAATATTCGATTGAATGTTTATCAAATCGGGTATAAAAGCGAGACAGACTAGGCTGGGAAGCGAGTGCTGGCGTTCCAACGATTTTCTTAAATACAGGGTCGTGAGTCAACTGTTCAGCAGTATCATCTTTTG # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 7460-8225 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLOO010000048.1 Caldibacillus hisashii strain N61 No61_ctg048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 7460 30 100.0 37 .............................. CAGGAAGTAATTGAATGTATCGTTGAGAAAAAATTTA 7527 30 100.0 37 .............................. CCATATCCAAAACTTAGACCATATGTGCCTGTATCAA 7594 30 100.0 35 .............................. CATCTCGGAGAAGTTCACGAAATAGCTTTTCTTTC 7659 30 100.0 36 .............................. TACCTGTAGTGACAGATTAGCGAGCGGAAAGAAAAC 7725 30 100.0 36 .............................. GAACAAGATGAGCAAGGATATTTTATTTATGTTTTA 7791 30 100.0 36 .............................. ACGTCTGGGCCATAATGACCGTATCCGATTGTCCAA 7857 30 100.0 38 .............................. TAGGTGAAAGGAGTGTTAACATGCAACCTGTCGAACGT 7925 30 100.0 37 .............................. AACGGGATATAATCCCCGTTTAAGACGAATCCCGCCC 7992 30 100.0 37 .............................. CAATATCGAACGAATCTATGTCCGGGAAGATGACCGG 8059 30 100.0 38 .............................. GGCCTCGAGCATTACCGGTCGGGAGAAAATGCCCGAAG 8127 30 100.0 38 .............................. TTACGAAGAGTCCGCCAAAGACCGTCGTTGACCATTTC 8195 30 80.0 0 ...............T...AT....C.TT. | C [8213] ========== ====== ====== ====== ============================== ====================================== ================== 12 30 98.3 37 GTTTATATCTTACCTATGAGGAATTGAAAC # Left flank : GCATAATTTGAGTTTTATAGGAATTGGCTCTTTTGGTCCTATTGATATTAATAAAAATTCAAAGAAATATGGTTTTATAACAACTACACCTAAAAAGGGGTGGAATAATTTTAATTTTTTAGGTGTAATGAAAGAACGATACAGTGTACCTATCGCATGGACGACTGATGTAAATGCTGCGACATATGGAGAATATAAAAAAGGAAATGGAAAAGTTAGAACGAGTGTTTTGGTATCGGAATCGGGGGTGGGGCAATTATTAATAACAGGATATTAGAAGGATTTGGTCACCCAGAGACAATACATATTTTTGTCGTCGACCTCCAATAGCGTAAAAACCCCGGGGGATCGACGACAAGTTATTTTGTAAAAAAATCAATAGAAAATGCTTAAATTACGTGTATTTATGAAAAATATAATTGCTAGAAAACCAAATTTTTATTATAATTAACACAAGACCACCAATACAAAAAACCTTATTAAATCAAGGATTGTTTGGG # Right flank : CTCTGTCATTTTCAAACTACCACCTTGTCAATTTTATTGGTCGTATCATTGTTGATCGTTTTTTCCCATTTTAAACTGAGATGAATCATTAGAATTTGATAGCGTTTATTTGTATCGTTTTATATAAAGCAAGGAGATGTTTTAATATGACAACAATCGCATTTGATCTTGATGATACATTGTATGACAGAACGCAACCTTTAAGACAAGCCCTTTTAGAAATTGATGAAGCGAAATCTCTCCCTTTTCATAAATTTCTTAACGTTTTTCAACAAAATAGTGATATTGCCTTTGAAAAAGTGAAAGATCATATTTGGACACTAGAAGAATCACACATTTTCAGAATTAGAAATACGCTTCATCAACTGGGAATTGATATAAGCTTAAGTAAGGCACAAAATTTCCAAGACCAATATAAAAAAAATCAACAACAAATTGAGCCCTTTCCATGTATCTTAGAAATTTTAGACTTTCTTCAGACAAAAAATATACAAACGATA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 12727-10436 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLOO010000039.1 Caldibacillus hisashii strain N61 No61_ctg039, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================= ================== 12726 32 100.0 34 ................................ AGAAGTCAATTGGTCCCTTATCGCCTCAGGTGAC 12660 32 100.0 35 ................................ ATCATCACCGCCGCCTGTAGCTACACCAATAATAA 12593 32 100.0 35 ................................ ATAAACAGGAATAACATTAATCGCTTTATATTGGC 12526 32 100.0 36 ................................ TTTAAACTCTTCGTAGTTAAATTCCATCACTATATC 12458 32 100.0 35 ................................ TTCGTTTGTCATCCCTGGAGGTTTAACTAAACTGA 12391 32 100.0 36 ................................ GCTACTGGTAGCCCTAACTGTAGAGCAACAAAGGGA 12323 32 100.0 33 ................................ ATTATAATGAGCGCCTTTCTTACCAAGATAGCC 12258 32 100.0 33 ................................ TCTTACTACATCAATTTTTATTTGATGGTCATG 12193 32 100.0 36 ................................ CCTGAAGGGGATTGACTTGACACAAATTGGAAAAAA 12125 32 100.0 33 ................................ CTTGTATTAGTTCGCTGGCCTCTTTGCCCTCGA 12060 32 100.0 35 ................................ CCGTCTGCCTCAACCCGATAACGGATTTCGCCGCC 11993 32 93.8 34 ........T..............T........ ATCTCCAACTGGTACCCAGTCATCACAAAAACCT 11927 32 100.0 36 ................................ TTGGAGCAGTATGTATATATACGAATCCAAGAAGAT 11859 32 100.0 41 ................................ ATACGAGCGGTAAAGAAAAAAAAATAAAAAAATAAAAAAAT 11786 32 100.0 36 ................................ TTGGAGCAGTATGTATATATACGAATCCAAGAAGAT 11718 32 100.0 36 ................................ ATTTGTTGGTTCATCATCTTCATTTAATGGTTCATC 11650 32 100.0 33 ................................ CCGACAGAACATTGCTACATAATAGGCGGGAAC 11585 32 100.0 35 ................................ GTTTATTATGTTTCCGAATTCGTCAACTGTTTGAT 11518 32 100.0 34 ................................ TTTTAATAAATCAATTTCAGCCTCATGTAGCTCC 11452 32 100.0 34 ................................ CCTTGATAGTACTGTAGAATTTGGCTCTATATGG 11386 32 100.0 34 ................................ TCCATTCACTGTATAACTCGTGATACCATACATA 11320 32 100.0 33 ................................ TTGGACGTGGACGGACTCCTTGCAACGTATAAC 11255 32 100.0 33 ................................ TTTTCAATCTTCTGGCCATGTTGATGGTTTTAA 11190 32 100.0 33 ................................ AAGGCAATTAATATGGTTAAACAATCTATTGAC 11125 32 100.0 34 ................................ AAAGGAAAGACTTTAAAGGATATATACAAAACAC 11059 32 100.0 33 ................................ AATAAAATCTCCTACGATATACGGTGTTTTTCC 10994 32 100.0 34 ................................ ATAAATTTTTCCATGTGAATTGAAAACGTCGAGT 10928 32 100.0 34 ................................ CATAGCATTAGTATTTAAAAGAACGTCACCTAAT 10862 32 100.0 35 ................................ GCAAACAAAAAGAATCAAAGCATTAAACACACCAG 10795 32 100.0 35 ................................ TGGTGAAGGTGAAGGGTCAACAACAATTGCCGAAC 10728 32 100.0 34 ................................ TAATTCGTATCCTAATTTTTTTATTATGTTTTCC 10662 32 100.0 34 ................................ TATCATTCTATGATCTGTCCCTCTTGATCCGTAA 10596 32 100.0 34 ................................ AAGAAATGGGACTGAATCATGTTTTAAAGATGGA 10530 32 100.0 31 ................................ GTGAATAACCTCGACATTTGTCCGTATCGGA 10467 32 96.9 0 ...................T............ | ========== ====== ====== ====== ================================ ========================================= ================== 35 32 99.7 34 GTCGCACTCTTCATGGGTGCGTGGATTGAAAT # Left flank : ACGTTCTGATTTAGATGAATATCCGCCATTTTTCTGGAAGTAGGTGAGAGATTGCTTGTATTAATAACATATGATGTTAATACGGTTAGTACTTCAGGACAAAAGAGATTACGGAGAGTTTCAAAAATATGTCAAAATTATGGACAACGTGTACAAAATTCAGTTTTCGAATGTGTAGTTGACGCTACTCAATATACTACATTAAAATTTGAACTTGAGAGTGTTATAGATAAAGAAAAAGATAGTCTTCGATTTTATAAATTGGGAAATAATTATAAAAATAAGGTTGAACATATCGGAATAAAGCCTTCAATTGATATGGAGGGAACATTAATTGTTTAGTGCGAATGTAAAGTACACATAATTTTCCTAAGGGTTTCGCACCAAATTTTTTACTATTTTTTTCCATTTATTTGCTCATTTACTTAAATGTTCTTTAGTTAACTAAAGAAAATAGCGGTTTTTCTGTATATTTTGGGTCAATTTGGCAGAAAATCGCT # Right flank : CGTGACGGTCTACCTAAAGACGAAATGGAAATGACTGTCGAACCCTACATAAATTTCACACCAAAGGAACTATAAAATAACACAGGAGATGACAATGATTGTAGCGAAGATAGTAATATAATAAAATATGACTTTTCTGGTGGTGTGGATTGTGAAAAAAATTTTGACATCAAAGAAGGCTGTGTTTGGAGGCTTGTTGTTCTTGCTTATTGGTACATGGGTATTCAGCGAAATGAGCAATCGTTTTTCCATGAAGGGGCAAGAGCCAACTGATGAAGGCTATATTGTTTTTCACAATGGTACGAAATATTTCGTTAAAGGAGAAAATATTACAGCTTCTGACTTGGAAAATTTTTCTGATGAAGATGTTACGATGTTTTCAAAAAAGTTTGAGGAAATAGCGATATTACTAGATGATGGAATGAAACTTTTAGGGACAGGAATTAAAAGTGGTGATCAGGTCGCTATTTGGTATGAAGAAGTCCTTGAATCGTACCCGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 21642-21339 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLOO010000039.1 Caldibacillus hisashii strain N61 No61_ctg039, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 21641 33 100.0 34 ................................. AGCTTCGTCCTCAGTAAAAGCCTTTTGCATCTCA 21574 33 100.0 34 ................................. TCCATCTCTAAAATGCTTATACTGTCTGAATATA 21507 33 100.0 35 ................................. TCGCCAAGACCTTTAAAAAACCCAACAATCGTATC 21439 33 100.0 35 ................................. GTAAAACTGTGGGAACCGATTTACGAACGGTTGGC 21371 33 90.9 0 ..........AT.......A............. | ========== ====== ====== ====== ================================= =================================== ================== 5 33 98.2 35 GTCGCACTCTTCACGGGGTGCGTGGATTGAAAT # Left flank : GTCGTCATTTCCGGTCTCGTCCTATACTCAGTGGTCATGCTGCCGCTATTTATTCCGGTCGTTGTCAAAATCTTCGGCAAAGCCAACTGGTGGCCGTTTGTGGGTAAGAAAGATTAGTACTTGGAAAAGAACTTTTGATCAACCGTTAGAAGGAAAGTATATATAGTAATCTCCTTAAGTTTAAATATAACTAATTAAAAACCACCTCAGAAATGTAATTGAGGTGGTTTTTCGATAAATAATGAAAAATCAATGTAGATTCGTTAATATATATTTAAGGAGAAAATAAGTTAATTTGGTTATAGTCCATGGAGGGAAAAGAAAAATGAAAGTGCGAATAGTAAGTGAACATGATTTCATTAGGGGATTCGCACAAAAAATTACTATTAAATTATCCAGTATTTCCCATTAATGTTAATATTTTTTGTTTTGTTCTTTAGTTACCTAAAGGAAATAGTGTATTTCTGTAATTATTTAATAAAAAAATTACAGAAATCGCT # Right flank : AAATTAAGTAAAAATTGCTAGAGTTCGAATCATATGATTAGTACAAAACTCAAAAAAGTTTTTTGAACAACTTTATGTTAAATATAGCATGAACTCTATTTAATGCTGCACAAAGCTTAATATTTTGGAAAAATGGACTCTTTGGATGGTAACCATATAAATATTTTGAAAAAATAATGAAAACGCTTAAATAAATAGGAAAAAAGTAGTATAATAATAGTGATTATTTTTAAACTAGGGGTTGATAAATTGGACTCTATTGCACATATACGAGAAAGTGATAAAAAGATTCAAACAGTTGAACAACACCTTCTAGAAGCAAAAGAATTAGCCGAAGCTTACGGAGCAAAAATTGGAATTACACATATTACTGGTTTAGCTGGAATGCTTCATGATTTAGGGAAATATTCAGACGAATTTAAAGAGTATATTTTGGAAGCGGTAAATAATCCTTTCTCCCCTCTAAAACGTGGGAGTGTTGACCATTCAACAGCAGGAGG # Questionable array : NO Score: 8.97 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA //