Array 1 209957-209089 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040848.1 Pasteurella multocida strain EB104 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 209956 28 100.0 32 ............................ ATTAGCTGAAGACCGATTTATTAGAAATACAG 209896 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 209836 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 209776 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 209716 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 209656 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 209596 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 209536 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 209476 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 209416 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 209356 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 209296 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 209236 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 209176 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 209116 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.5 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATACTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 767071-765724 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040848.1 Pasteurella multocida strain EB104 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 767070 28 100.0 32 ............................ TTACCTTCCGTCATTGTTGAGCCTCCGCTAGT 767010 28 100.0 32 ............................ GCTACAAGCAAGCGACGATAGTTTTAATTTTA 766950 28 100.0 32 ............................ AAAGCCTATGAACACACAACCCTTGCACAAGT 766890 28 100.0 32 ............................ TTATCGCGGAAGTCAGTCGCCATAATGGCGTA 766830 28 100.0 32 ............................ ATTTCAGGTGAGCAGTGGATGATTATCCCGAG 766770 28 100.0 32 ............................ ATGTGTCTAAATCGGGGTAGATTTCCGCGAGC 766710 28 100.0 32 ............................ AAAATCTCTGGAATTTGTCGCATATTGCCTTT 766650 28 100.0 32 ............................ GTTGCAAGGTTGTAAGCTGTCCCCGCGTATTC 766590 28 100.0 32 ............................ ATGAACACATGATCACTTCTTGATGGATCAAA 766530 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 766470 28 100.0 32 ............................ AAGTGTCCGCGCTCACGTTAATCCCCGTAAGC 766410 28 100.0 32 ............................ AAGCCACAGCGCAGATGAGCACGTCATCACGT 766350 28 100.0 32 ............................ GATCCAAGCGTTACAAGTGAATCGTGGCTCTT 766290 28 100.0 32 ............................ AAGCACTATGCCGATAGCTCCCCAAAAGTCAT 766230 28 100.0 32 ............................ TAGCAATGGCAACAGCCTTTTTTATTATAGTT 766170 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 766110 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 766050 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 765990 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 765930 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 765870 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 765810 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 765750 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 23 28 98.6 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //