Array 1 2804-68 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDAR010000036.1 Streptococcus lutetiensis strain PA11563C1 KS2_NODE_36_length_9272_cov_105.119_ID_2050, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2803 36 100.0 30 .................................... TCTTGACCTAAAGTTTCTTTAGTTCCGGGC 2737 36 100.0 30 .................................... AATTGTAAGCCATGTGTATATCTCCTTTAT 2671 36 100.0 30 .................................... AGACTTTTTGGTTTTGTGGTCATAACAGCA 2605 36 100.0 30 .................................... TATCTTTGTCAGTATTGTTTGGCAAATGGT 2539 36 100.0 30 .................................... TATCAATGCGTTGAACCTTATTTGTGCTTT 2473 36 100.0 30 .................................... TAAAAATCAATTAATTATTAATGAATTACT 2407 36 100.0 30 .................................... CAATTTAGATGAATATACTGTGACGGAGGT 2341 36 100.0 30 .................................... ATACTATGCTAGTGTTTCAATTCACTTTGT 2275 36 100.0 30 .................................... AAACATCCAAATATATATACATATGAAACT 2209 36 100.0 29 .................................... ATAGTAGATGATATCTGCGCACTGCATCA 2144 36 100.0 30 .................................... TTTATCAAATTGCATTCGGTGCAGATGAGA 2078 36 100.0 30 .................................... CCATTCATCTACCTCCATAATTTCCAATTT 2012 36 100.0 30 .................................... AATACGAACAATAGTCGCTACGGTTCGATT 1946 36 100.0 30 .................................... TTAAAAGCAATCAATGAAGATACGTCACTT 1880 36 100.0 30 .................................... AGTCCGCTTGGTCTATCTATCTTTGATAAT 1814 36 100.0 30 .................................... ATTTTGTAAAAAAATGTTAAAATGAGTACA 1748 36 100.0 30 .................................... ACTTCAAATTTAAACAGTATTCTTGATCAT 1682 36 100.0 30 .................................... TTGAAATCTGTTTGACTGAAAGCGTATTAT 1616 36 100.0 30 .................................... ATTTAGCTATCGAGGAAACCAAGTGCATCG 1550 36 100.0 29 .................................... CGAAGTTAATGAGCCATTTCCATGGATCT 1485 36 100.0 29 .................................... CAGCGATGAAAGCAATTCAAAATGCGCTA 1420 36 100.0 30 .................................... TCGCTAAATTTATTTTTTACTGCTGGTCTG 1354 36 100.0 30 .................................... GAAGAAACAATGAGAATGTTAGTGGCTCAC 1288 36 100.0 30 .................................... TTGAAGAAGAGAACAAGTCCTACGAGCAAG 1222 36 100.0 30 .................................... TGGAAATCAAAGACCAATTTGTTAACGACT 1156 36 100.0 30 .................................... TAAAACGTGACTTCTACACGAACAGCACCA 1090 36 100.0 30 .................................... ACAAAAGGCCCAATCGATGATGAGGTCTGG 1024 36 100.0 29 .................................... ACCATGCAATAATGTTCTCGGCTGTGTCT 959 36 100.0 30 .................................... CTCATTCTATTATACCATAAACAAACGAAA 893 36 100.0 30 .................................... CAATTTAGATGAATATACTGTGACGGAGGT 827 36 100.0 30 .................................... CCGAATCGGCGATTATTGGGTTCGTCAAGA 761 36 100.0 30 .................................... CTTTAGTGGAGTAGTCTCCGCTTTCCGCGT 695 36 100.0 30 .................................... TTTAATCAGCGAATTAATTTCTGGGAAAGG 629 36 100.0 30 .................................... CGGTAACACATTTATTCGAACAACTAGCGC 563 36 100.0 29 .................................... CTATAATAGGCATGAAAGCAAGCAACAAT 498 36 100.0 30 .................................... CAAGTACTATTAGTATCAAATCGCTGCACT 432 36 100.0 30 .................................... TGTCTCTCGGAACTTGTGGTTTGTTTTCTG 366 36 100.0 30 .................................... CCGACGAAGAAGCCGAAGATGGTGACGACT 300 36 100.0 30 .................................... TGTAGGCGCATGTAAAAGATTATCTCCGTT 234 36 100.0 30 .................................... GTTGAACGTTTAGACGCTCGCGGGCAGCAC 168 36 100.0 31 .................................... GCAGATTCTTTGGCTTTTGCCCTTATTTTGT 101 34 83.3 0 ......................CAAC...--..... | ========== ====== ====== ====== ==================================== =============================== ================== 42 36 99.6 30 GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Left flank : ATGGATGATTACCTTGATTATGCCTCATTTATAAGAATTTGTCAGGTTATCACAAGAATGGCTGATGAGTTTCCAAATTTTTATTGTACGATTTTTCCGTCAAACGAGAGCTACTTGTATGTGACTAAAGAAACAATAGAAAATATTACCATTGTTTCAGATTATATTGAATCTTTGTTTGATCTTGATTTTATGTATGAAAGGTTTGTTGGAAGATATCCATCCAACAATGTACCAACAAAAAAAGAATTTTTAATTCTTTTACAGAAGAATGCAAGTTATTTATTTAGTGAGCAAATTTCATATGTGAGTTTAGGAATTTCGGATATGGTAGCTATCAAGATACTAAATAGTTTATATCACTATGATAAGTCAGTTAAATATCCAATTTCAGAGATAAATCAGCTTGAAATAAGCTTTCTTAAGGATAAAGATTGACTTTTAGGCTCAATGAAATTATAATTCTTGTAGAGTATAAAGACCCAAAATGACGATTTGAG # Right flank : CCCCACCTAGTTCGTCACTGGGTGGGGTAATCTATGTGGGTCATAGGTTTGTAATGAGTTGAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 6353-6520 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDAR010000022.1 Streptococcus lutetiensis strain PA11563C1 KS2_NODE_22_length_25355_cov_537.78_ID_3076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6353 36 100.0 30 .................................... TCCATCTTTTAATTCTACGCCTTTAATTGG 6419 36 100.0 30 .................................... GAACTGTAGGAACAATACTTTGAATTTCAC 6485 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 TATTTGCTACCATGCTATTTTGAATGGCTCTAAAAC # Left flank : GGCAAACATGAAATAAAAGCAGACAAAGCCAATGAAATAGCTAAACTGTTCAATGTTTCTGTTTCCTATTTACTGGGCTATTCTGATAAAAAAGAGCCATATTATAATGATGAAATACTTTTAGATAATGGTAGCGGTGGCGTTTCTTCTCTTAGCTTTAAACGTCATAATGACTTACAAAAAGAGTACGATAAGCAAATTAGAAAAGATTTTATTAATTTCTTGCGTTCATATGATTTTGTTATTAGTGACAATGAAATAAAGGTACTCTTAGAACAGATTTCAAGTTTAAACATTAGTACAGTAGCTCATATTGACCGTGAAAGAGTACTCCAACAAGTCAACCCTAAAAAATATCTTATAGAAAATGGATATAAAGAATTAGGTGACTTGTTCCAATCTAATAAAGGGATTGATGACTTTTATAAAGAAAAAGGTTACGACCCAGAAAGCACTTTATAAAATCACCCCAACCGATAACGATTAGGGCGGATAATATT # Right flank : CCTCAGACTCTAAAACCTTTATAGCCTGCCTGCTGTAGTTAAGAGAAGAGGTTACAAATGGTAAATATTAAGAAAATCACAAAGAAAAACGGTATTACTGTGTACCGTGAACAAATCTATCTAGGTATTGATTGCATGACTGGGAAACAAGTCTATACAACTATTTCAGCACCTACAAAAAAAGAACTCAAACAAAAACGTGAGTTCAAAATAAACAAATTTAAAGAAAATGGATACACGCGCCATAAGAGTGTGAGTGTTAAGAACTACCGTGAACTAAGTGAACTGTGGTTAAAAAACCATAAGTTAGAAGTTAAACCACAAACATATAGCCAAACAGTTAGCGAACTAAAAACGTACCTTTTACCTGTGTTCGGTGATATTAGGGTAGAAAAAATCACACTCCCAATGGTTCAAGTTTTCGTTAATAAAATAGCTAACAACCCTAACCCTGGTTCGGTATCTCTAAAAATAATCTTGTCTATTAATAAGCGTATTTT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATTTGCTACCATGCTATTTTGAATGGCTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 575-211 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDAR010000053.1 Streptococcus lutetiensis strain PA11563C1 KS2_NODE_54_length_3134_cov_117.774_ID_2275, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 574 35 94.3 31 ...A......................G........ CATAACTTGTGAAAGTTGTAGGGAACATTTC 508 35 100.0 31 ................................... CTGAAATTACAAAAGAGCTCGCTAGCTACAC 442 35 100.0 30 ................................... TGATAAATACCATGACCATTTACAGATCTA 377 35 100.0 31 ................................... CTCAAATGTTGCCATGTGTCAACATCTGGAA 311 34 88.6 31 C..TA..........-................... ATATTCCGAGTCGTCTCGGAATTTAGATTTA T [299] 245 35 88.6 0 ...TA......C..............C........ | ========== ====== ====== ====== =================================== =============================== ================== 6 35 95.2 31 ATTCGCTACCATGCTATTTTGAATGGTTCTAAAAC # Left flank : TGGTTATAATGAAATTTATTACGAGCTTGGACCTACTGACGGTAAGGGTTTCGGTGATATAGTATATAAGCTTGAACAATATGAGGAAAAATTACAAGATTATCTAGTCGAAAAAAAAATAAAAGACGACTTTTATCGTAAAACTGGTTATCATTTGTCTCAACCCATGGTTATACCTGCTGAAGAGATGGAAAGAGAAACTAAAAAATTGATATCAGATTTTAATACTGATTTTATAGAATTCCTAAAATATCATGATTTATACTTGTCTAATTCTGAAATTGATAAAGTTATAAAAATTATGTATACGTATAGCAACGCCAATAACGTCTATTTAAGCTCTTTGATAAGGGATAAAAACCTCAAAGAATTGCGACAAAAAAAAGAAAAAGATTTCTCTGAATTATTTAAATATAGCTCACTATGGGAAATGAATTATAAAAGCTTAGAAGAAAACAACACCGACGCCCCACCCGATAACGATTAGGCGGATAACATTC # Right flank : CCTCAAACTCTAAAACCTTTATAGCCTGCCTGCTGTAGTTAAGAGAAGAGGTTACAAATGGCAAATATTAAGAAAATCACAAAGAAAAACGGTACTACTGTGTACCGTGAACAAATCTATCTAGGTACTGATTACATGACTGGGAAACAAGTCTATACAACTATTTCAGCACCTACAAAAAAAGAACTCAAACAAAAACGTGAGTTCAAAA # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCTACCATGCTATTTTGAATGGTTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 50539-51963 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDAR010000003.1 Streptococcus lutetiensis strain PA11563C1 KS2_NODE_3_length_110999_cov_442.117_ID_4205, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 50539 36 100.0 31 .................................... ATATAAACTCACCATCGTATTTGAGTGAATA 50606 36 100.0 31 .................................... TTGCCGTTTTCGAAAGAAGATAATTGACTGG 50673 36 100.0 30 .................................... ACTTCGCTGGCAAGACTAAGGAAGAAACCG 50739 36 100.0 30 .................................... AGGTTTAAACTAATGGTTCCAAGCTTGGCT 50805 36 100.0 30 .................................... TTGATAAAGAATTAAAACGTGACGAATCTA 50871 36 100.0 30 .................................... CTAAAGAAACTGATTTTATTGGACAATACT 50937 36 100.0 29 .................................... ATACAGAAGAAAAAAACACGGCTTGGTAT 51002 36 100.0 30 .................................... TGTTCAATTACTTAAACAGTCTACATGGAT 51068 36 100.0 30 .................................... CTTTCAGTTATCGAACAATCATCAACAGAG 51134 36 100.0 30 .................................... TTTTTTTTTCCTTTCTATATATTAAGCATT 51200 36 100.0 30 .................................... CTTTTAGCAGATGATGAATCATACACCTAT 51266 36 100.0 30 .................................... CAAAAGAAAAACAAAGAATGCGTGAATTAC 51332 36 100.0 30 .................................... CTGAAAACCAACAGCAAATGGCTAGATTGA 51398 36 100.0 30 .................................... AGATATATTGAAAGTCAAATGAATCAATTA 51464 36 100.0 30 .................................... ATTTGGCAGCAATGCTGGAAAGTGTGTCAC 51530 36 100.0 30 .................................... ATTTTCTATTTTTTATGCGTGTTTCAAGTA 51596 36 100.0 29 .................................... TCCGCAAATTGGTGCGACGCGCCACAATA 51661 36 100.0 30 .................................... TATACCACGACTTGTTTGTTTTGAAATCAC 51727 36 100.0 29 .................................... GATTACTATACCAGTAATTGGTGCGCAAG 51792 36 100.0 29 .................................... AAAGCGAAGCCAAGAACTACTGGATTGGC 51857 36 100.0 29 .................................... CTTAATCTAATAAACTATAAAATTATCTA 51922 36 88.9 0 ....................T...AAA......... | A,C,TAA,T [51944,51951,51954,51958] ========== ====== ====== ====== ==================================== =============================== ================== 22 36 99.5 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TTTCACAAAGAAGAAGGTGGAAGTTTTTGGGTAGAATTTCCAGGATTCGGTGGTGAAACTGAGGGTAAAGATATCGAGGAAGCTATGAAGAATGCACGTGAAATGCTTGAGAGTTCGTTAGCTGCGTATTTAGATGAAGGACTTGCTCTTCCAAAAGTTATTGATATGAGTGAGTTAACCGTTGATGATGGCTTCATTACTCTGATTCAAGCTGATCCTTCACTGTATTTAAAAAAGACAAAAGCTATTCGTAAAAATGTTACGGTAGTAGAATGGTTAGTCAGATTAGCTGACTGTGAGCAGGTAAACTATTCTGAGGTTTTAACAAAAGATTTGGAGAAAAAAGTTGCAACTATAAGTTTTAAGATTGTTCAGGAACGTTGAAAAATCAAGGTTTTTAAGGTATAATAAAACTAACATTATGGAGCTGTTCGAGACTGAAGTCTGGCTGAGACAAATGGCGCGATTACGAGATTTCGTGAGAAAAATTGGTCCACGAG # Right flank : CTGTAGTAAAAATTACTTTCAATGTTTTTCAAAAGTTTTCTTTTATGGTAAAATTGAAAGTGAATTTATTTTAGTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTAGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGATCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTAATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCGCCAGCTGAAGGTGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATTGCCCTTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 52567-52867 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDAR010000003.1 Streptococcus lutetiensis strain PA11563C1 KS2_NODE_3_length_110999_cov_442.117_ID_4205, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 52567 36 100.0 30 .................................... TGCCTTACCTACGTTATGGACATACTAACT 52633 36 100.0 31 .................................... CTTTGGTCTATGGCGAATGAAAAGGCTTCGC 52700 36 100.0 30 .................................... TTCTTTATGTTATAATTAAGCATAGCCTTC 52766 36 97.2 30 ..............C..................... AAATATACGCTATAATATACTTGTAAGATA 52832 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 99.4 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTAGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGATCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTAATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCGCCAGCTGAAGGTGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATTGCCCTTTGGTTTGGGGAATAAAATAATTAAGTATGGAATTATTCGGAGCTGAAGTCAGGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAAATGGTCCACGAGG # Right flank : CTGTGGCTACTAAATATGAATACACCAAAACCCCACCTAGTTCGTCACTGGGTGGGGTAATCTATGTGGGTCATAGGTTTGTAATGAGTTGAGTTTTTATTACCTTTGGTTAAATAATAGCGCTTTCTGCAAAACTTGTAAAATGATTTGTGGTAGCTGGTTTTAGCGATATTTATCGTGCCTAGAAAACTTTTTATAGCACCAGTGGTGTTTATTTGTTATAATAGAAATAATGAATAATTGTATAGGATTATAGATAGATGGATATTCAAGAATTAAAAAAACGACAAGAAAAGATTCGCAATTTCTCAATTATTGCGCATATTGACCACGGAAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAAACTGTCTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGTATGGATTTGGAACGTGAACGTGGTATCACAATCAAATTGAATGCGATTGAGTTGAATTACACAGCTAAAGATGGTGAAACTTAC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //