Array 1 8319-13996 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXFL01000190.1 Xanthomonas oryzae pv. oryzae strain DXO-369 contig_190, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 8319 31 100.0 35 ............................... CAGCACCATCACGAACAAGTCGCCCACGAAATCGA 8385 31 100.0 33 ............................... CCAAGCTGCAAGGTTGCCCTTCTGACATTCCCG 8449 31 100.0 35 ............................... TACATTTATTTTCCTAGCTGAAAAAGAATGTGGCG 8515 31 100.0 34 ............................... TTGGGCGATGTTGAGCACAAGACCAGCAAGGCAG 8580 31 100.0 35 ............................... ATTGTCTCTTGGTTGGGTTAGAAGTTGTATGGCCG 8646 31 100.0 36 ............................... GTGACATTGGTCGACCCATCAGCACCAGATCCGCAG 8713 31 100.0 35 ............................... TTGGCCACAATGGCATAGATATCACTAGGCAGATC 8779 31 100.0 34 ............................... ATCGTATCCTTCGCGTACTGGATCACGTCGGCCG 8844 31 100.0 36 ............................... ATCGACCAAGGCGACAGCGCCATCGGGCAAAAAATT 8911 31 100.0 35 ............................... TGGCCAACGTAGAAGCTGCAACCCTTGGCGTTGCC 8977 31 100.0 34 ............................... ACGTGCGATTAAGCAAGGGCGAGTTATCTTCCGT 9042 31 100.0 34 ............................... CAGTCTTGAACAATGTCATCATACGCGATGAACT 9107 31 100.0 34 ............................... CAACAACGCGTAGATCAAGTGACAGAGTTGGCTT 9172 31 100.0 35 ............................... AATATCAAGCTCGTAATCACCAGGCTGATACGGAA 9238 31 100.0 34 ............................... ACGCCCTTACGCGCAATGGTCGTCATACGCCGTT 9303 31 100.0 33 ............................... TTGAGCGCGGGAAGAATGTGATTCTTTACCGCG 9367 31 100.0 34 ............................... TTGCCACCGACATAGAAGGTCTTGCCATCGCCGC 9432 31 100.0 35 ............................... CAGTGCGACCGCGCGGGCGTTCTCGGCGGTAACGT 9498 31 100.0 36 ............................... CATAATCATACCCTCCCAATCTGTTGTGCCAGCCTA 9565 31 100.0 35 ............................... ATCCGCTGCTTGTACAGCGCTACAACAGCAGTCAT 9631 31 100.0 34 ............................... TGAAGACGCCAACGTGATCTACCTGCGGGACGTC 9696 31 100.0 35 ............................... AAGCTCTTCGCTAAGCGTCTGCTCAATGAAGGAAG 9762 31 100.0 35 ............................... AATAACCTGGGCGCCCATCGTCAGACCTGCATGCA 9828 31 100.0 34 ............................... CCCGTGGCGGCGTCAGAGAAAACGTTTCAGGTCT 9893 31 100.0 33 ............................... TCCCAGCACGCCTTAACCGCATGGTCTTTGCAG 9957 31 100.0 34 ............................... ATCCGACGAACGGTAGTTGTTTCATTTTTGGTCG 10022 31 100.0 34 ............................... TTGTAGTCAGGGTCGCACAGCGCACCAGTAGGAC 10087 31 100.0 35 ............................... GCATGTAGCCGGGGTGTAGGGGCAGCGCCCCTACG 10153 31 100.0 35 ............................... CGCAGATTCGGGCACAACAGACACCTGGGCACCCT 10219 31 100.0 35 ............................... CTGGAAGCTGGCCACCGATAAAGGCGTTGCCTTGT 10285 31 100.0 35 ............................... ATCGCCTGCATGCAAAGCGTCAAGCATGCGTGCAT 10351 31 100.0 36 ............................... TCCATCTAAGTCAATACAACTTGTTGGCGCTTGGCC 10418 31 100.0 36 ............................... CTTGCATGGTGTTTTGAGTACATGGGCTTTATTGAA 10485 31 100.0 35 ............................... ATCATGATCCATAACTGCCATTTGGTTGTTGGTGG 10551 31 100.0 36 ............................... ATCCGAATACAGCAGAGCAGGGCAGCTGCTGAGTAA 10618 31 100.0 34 ............................... GTGATTGATGATGAAGTCCAAGCGCTGCCCGTCG 10683 31 100.0 34 ............................... CTTTTCTCTGGATCAATAGGTCTGGCGGAGTAGA 10748 31 100.0 35 ............................... ACGGATGTTGATAGTCAGCCTGGTGGGGCCTTGCA 10814 31 100.0 35 ............................... TCGCTGAGGGCAGTAAATACATCTGGCCGTCTATC 10880 31 100.0 36 ............................... GCGGCGGACTACGTCGCGGAGGCGAGCGTTAGTCTA 10947 31 100.0 35 ............................... ACCGTATCGCTAACCGATTGACGCGTGCGCAACCA 11013 31 100.0 35 ............................... CAAAGGCAGGCGGGACAATAGCGGGTGACCTGACT 11079 31 100.0 38 ............................... TGTCGATGACTCTTTCACCGTGGTTGCGGCGCATTGAG 11148 31 100.0 36 ............................... CGGGTACGTTACGCGCCCAGGGTCAACGGGCCTCCC 11215 31 100.0 34 ............................... CTGCACTACGAGGTGCTGACGATCGATCGCCGCT 11280 31 100.0 36 ............................... TCTTCACCAGATCGATACTTAACACGGATAGGTGTG 11347 31 100.0 35 ............................... TTTACCGCGTCGTAGCTCTTGCCAGCACGCGGCAC 11413 31 100.0 34 ............................... TGCATCGCCCGGTGCTGCCATTGCCGGCGAGTTG 11478 31 100.0 35 ............................... ACCGGTCGCAGCCTGCAATCAGACTGGTGCAGGCC 11544 31 100.0 34 ............................... CATGTCATAGCTCCATCGCTCGGGACGGGTGGCG 11609 31 100.0 32 ............................... GTGATTCGCAAGAAATCAAACCTGCGGCTCAC 11672 31 100.0 33 ............................... CTGCCCTCGCCCAGGAAGCAGGCTTCCGGGTGC 11736 31 100.0 33 ............................... GCGAAAGCATAGCGCAGCGAGTCGATAGCAGCC 11800 31 100.0 35 ............................... TACCCGACCCGGTTTGACGATGCCCAGCGGATCGC 11866 31 100.0 34 ............................... AATGCATCCGTACTGATTCCCACCGCTGAAAGCG 11931 31 100.0 34 ............................... AATGCATCCGTACTGATTCCCACCGCTGAAAGCG 11996 31 100.0 34 ............................... TATTAGATTTTTTGTACCACATTAACATTTAATG 12061 31 100.0 35 ............................... CGATTCATCGTCTCGCCGGAAGATGGCGCGAGCTT 12127 31 100.0 34 ............................... GACGTACGCAACCAGATCGATACCACCTACCGAC 12192 31 100.0 34 ............................... GTCGATGACCATTTTGCAAGGCCAGCCGGTCGAA 12257 31 100.0 35 ............................... CTTTCGCAAGTGGCTCACGAATCAGGCTCAGGCAA 12323 31 100.0 34 ............................... CAGTCTGCTGACATCGCCGACCAGTCGTCGTCGA 12388 31 100.0 36 ............................... CTTGCGCAAGTGGCTCATGAATCAGGCTCAGGCAAG 12455 31 100.0 35 ............................... GCTGCGTTTGACCGCGCAATTGCGTGCGTAGTGCT 12521 31 100.0 38 ............................... AACGGCCAGAGCAGTGGAAATGTGTCGTTTGCGATGAC 12590 31 100.0 35 ............................... ATTACGAAACACGGGCACGAAACTTACAACGCGTT 12656 31 100.0 33 ............................... GCACGTTGCGCCTAGACTTTGATCGGCAGACGG 12720 31 100.0 35 ............................... AGCATCAGCACGCCGCCATCGACGCCCGGAATGTT 12786 31 100.0 33 ............................... GAATTCCGCGAGCAACTCCGCGATGTCGCTCAT 12850 31 100.0 34 ............................... GTGTCGGGAACCGGTGGTTCGTCGCAGTTCGGCG 12915 31 100.0 34 ............................... CACATCAGCGCATCAAAGCCGGCATTGTGCGCAA 12980 31 100.0 35 ............................... ACTGAGACCGCAGCCATGGCAAGCAAAGCCGACGT 13046 31 100.0 37 ............................... CGCGCCAAATCGACTGCATTCGCCCAACTAGCGAAGA 13114 31 100.0 35 ............................... GTGGCCGTCGTGAACCCGTATCTCACCCCTCGCAC 13180 31 100.0 35 ............................... CACAGGAAGAAGTCGTCCCGCCGGTCGAAGCCACC 13246 31 100.0 35 ............................... TGGTACTGGACCGTGGCACGCCCGCGCCTGAAGAC 13312 31 100.0 34 ............................... ACCATGAACGGCCGACCGCCTCACGCCAAGCACA 13377 31 100.0 35 ............................... GCCTATGACCCGGATGCAAGCTACTTTGATGCAGC 13443 31 100.0 35 ............................... TGGATTGGCCATCAGAAGAAGAGGAGTACCTCAAT 13509 31 100.0 34 ............................... AGCCATCAACTGTTTGGCGATCTCCGCAACGTCG 13574 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 13639 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 13704 31 100.0 34 ............................... TTTCAATGCCTCCTTTTGCAGTTCCTTGGTATCC 13769 31 96.8 35 A.............................. TGCGCATCACCCAGTAGATCGACCGTGCTTCGATT 13835 31 100.0 35 ............................... TCCACGTCCAGCGACCGCATGCCGCTAACTGCCTT 13901 31 100.0 34 ............................... ATAATCGTAGGTCCTAGGTTCAGAGGTTGGGTAC 13966 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 87 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //