Array 1 2042-3714 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNUG010000082.1 Lactobacillus delbrueckii subsp. lactis strain CIRM BIA 233 CIRM_BIA233-i1-1_scf82, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================================================================================================================================== ================== 2042 36 100.0 30 .................................... CCCTGCCACCCCATCTCCTGTTAACGAGGA 2108 36 100.0 30 .................................... ACGCTACCGGCTTCTATGTTGGTAAGGGGG 2174 36 100.0 30 .................................... GCTCTTTTTATTGTTATCCTCTTTCATCAT 2240 36 100.0 30 .................................... GATGTATACATGTGAGGAGTTCCAAGTGGA 2306 36 100.0 30 .................................... AAAATGTCAGAAGAATATGAAGAATTATTT 2372 36 100.0 30 .................................... CAAAAAATCCGTGTAAGAACTCGGTCACCG 2438 36 100.0 30 .................................... ATGAATTTCTTGACGTTTCAAGTGATGACA 2504 36 100.0 30 .................................... GCGACAATTGCCAGAATAATCGGGCCACCA 2570 36 100.0 30 .................................... CTCCCCAAAATGAAGACCCCTAAGGCCTCC 2636 36 100.0 30 .................................... GGATCGCTGATCGCGTCGTCAGCCAATTTG 2702 36 100.0 30 .................................... TGACAATTGGCGCAATCGCTGAAAGTGGAG 2768 36 100.0 30 .................................... TTCACCACCTTAGGGAACTCGGTCTGCCAA 2834 36 100.0 30 .................................... TGAGTTTTCGACCAGTTTATATATTTTTTT 2900 36 100.0 30 .................................... AAACTGGCGTAGATAGCCCCAGAGTCAAGT 2966 36 100.0 30 .................................... TCGTTATCTTGATAGAATACTTTATCATGA 3032 36 100.0 30 .................................... GATGCGTACTGGTGGGTGATCGTGTCTGAT 3098 36 100.0 30 .................................... AACTCGTGAAAGCGTCCAATGCCTTCACGA 3164 36 100.0 30 .................................... AAAATGATCAGTTCAGAGATGGTAACGTGC 3230 36 100.0 30 .................................... TCACCATGCTCAAAAGCGATATTAAAACCA 3296 36 100.0 30 .................................... GTGCCGCTGACAGATCAGATGGCGGCCGTC 3362 36 100.0 30 .................................... ATAAACGATCATTTCAGTTCTCCTTTTTCG 3428 36 100.0 30 .................................... GTTGACGGTCAAGCTTTCATTGTCAAGTAA 3494 36 94.4 149 ................C...T............... GTTGTGTAGGTTCAAATCCTGTACTCTCCTTGTTTTGGAATATTTCCATTCAATGTTGTCAATTTTCCCGACGTATGTTGGGGGTGGCCATCATAATGGCCTAATACTAAGACGACAATTCTACTCATTCCACGCAGGTGGGGGTGATC 3679 36 75.0 0 ..........A..........C...G..GAC..AAG | ========== ====== ====== ====== ==================================== ===================================================================================================================================================== ================== 24 36 98.7 35 GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Left flank : CAGTGAATCTTTACTTCAAAAGTACATGACCAAATTAACTAGTTATGTAGTTGATGAGCTAAGCGCAGATGGCAGAAACAGAATCATTACCTGCTATCGCGATTTACTAAATGCTGTTCAAGACGAGTTGCTTATGGAAGATTTGCCGCTTGAAATAAGTTTTGACACAGACTTGAAGAAACTCTTCAAATTTGGTGGTCTACACTTCAACAAGACACTCACTCGCGATCCATATGGTATAATCGAGACAGTACTTAGGATACATGACAGGTTAGATCTTAAGTCTACTGTTGTTTTTAGTAATGTAGCTCATTACTTAGATGCAGAACAGTTTAACGAAATATCCAAGCTGTGCTTAGAGCTAAAAAAGTCTATTATTTTTATCGAGTTTTGTAGCCATAAGGATCAGGTTGTATATGGTGATGCAAAATTCAGTTATATCGATGAAGACCTTGTTGATTGGTACTAGCCTTCTATTAAAGCCATGTTAAAAAATAACG # Right flank : GTGCTTTTCATGATTGAGAAGCACTTTTTTCTATTGAACACAACAACTTAAAAAAACGCTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATATACTGGTTATAAAAAAGCTGAGCCAAGCTCAGCATCCCCAAAACAAAACTTAGTTGAGGAGAATAAACACATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCCGCCATCGACCTGGGCCAAATCGCCCTGCACGGCGCATTAAAAGAAGCCGGCCTTGACGCCGAAGCTCTGGACGCTCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATGGCCCGGCAAATTGCTTTAAATGCCGGGATGCGGCAGGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGCTCCAGCCTCAAGGCTGCCCGCCTGGCTGAAGCCCAAATGTTAATCGGTGACCTGGG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.45, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //