Array 1 2634-87 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGINM010000012.1 Azospirillum agricola strain CC-HIH038 Ga0451084_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2633 37 100.0 38 ..................................... GTCAAGCCGCTGGGCGGTACCGTGACGATCGCACGCGC 2558 37 100.0 36 ..................................... TCGGTCCCCGCTTCGGCGTCGGCAGGTCCGTGACCA 2485 37 100.0 37 ..................................... AATTCCAAACGCTACCTGGACGAAAACCCCGACGTCG 2411 37 100.0 37 ..................................... GCCAACAGCGCGCAGGCGCAGGAATATGCCCAGAACC 2337 37 100.0 36 ..................................... ATCAATTTGCAATGAGGCATATACGATGACCCCTCC 2264 37 100.0 37 ..................................... TGCAGCCGTTGCGGTGATCTACTTCATGTGTAGGAGT 2190 37 100.0 39 ..................................... AAGATCCAGAACGTGATGGGCTTCGCCATGACCGACCTG 2114 37 100.0 36 ..................................... CACAAAGCCGTCGCCCTGCAGTGCGAGTCCATGAAC 2041 37 100.0 36 ..................................... AATTGGGCCGCCGAGCGAGATGTCGTTGCGGTGTCG 1968 37 100.0 35 ..................................... AACGGCTTGAAGGTGGTGGACGCTCCCGGCAGCCC 1896 37 100.0 36 ..................................... GGCGCGGACACGCTCGTGCCGGTGGCCCGGGTGCAG 1823 37 100.0 40 ..................................... AACGTGCCCGCCGGGGCTTCCAGCACGCCGCCGGATTCGC 1746 37 100.0 38 ..................................... AAGAGGTCGCCGTGCGGGCCGACGCCATACGGACGGAC 1671 37 100.0 35 ..................................... ACCTTCACGTCGTCGTCGTCCGCCGGCCCGATCCA 1599 37 100.0 36 ..................................... CGTTGAGCGCTCCGGTCAGGTCGCCGCCGGATAGGG 1526 37 100.0 37 ..................................... GCGAAGGACTTTATCTCAGCCTGCTTGACGTCCGGTC 1452 37 100.0 37 ..................................... GTTCTACTGATGTCGCCGAATGGCGATGGAGCGAGCG 1378 37 100.0 37 ..................................... CATCGGTGCAAGTCCCACTGTCTGACCTGCAAACTCA 1304 37 100.0 39 ..................................... CCATAGACTGTATCGGCCGGAGGCGTGGGAGTGCAGGCA 1228 37 100.0 34 ..................................... TCGCCAGAATTGACCATCACCCTATCGCCTATGG 1157 37 100.0 36 ..................................... GGTGTTCCCCCAGGTCCAGGCGGCACGCCTGGAGCC 1084 37 100.0 38 ..................................... TTCTACGGCATTCGCTGCGGTTTCGGCATCGGTAAGCC 1009 37 100.0 37 ..................................... CCGACCACCCGTGTCGGCCGCCGGCTGGTGATTTCCC 935 37 100.0 36 ..................................... CAGTACTCTGCGGCTTTTCGCAGATCGCTGTTGGCC 862 37 100.0 35 ..................................... AAGACGCCAGATGTCGGAGAAGTCTTTCAAGGTTC 790 37 100.0 41 ..................................... GGGAAGGACTACGGCGCCACCGCGACGATCAAGGACGGCCG 712 37 100.0 40 ..................................... ACTTGGACCGACATGCAGCTCGGTCCCAGTGGCAGCCCGC 635 37 100.0 38 ..................................... GGAAGCCACAGCAACCCAAGCAGACCGAGGCGCCAGAC 560 37 100.0 35 ..................................... CTTCCGAAAGCCCCGCGACAGTCCACCGTGATTTG 488 37 100.0 36 ..................................... TCCAAAAAGAAAGGCGCCCCACGGTGGAGCGCCTGT 415 37 100.0 36 ..................................... CATGGCGGCGCGCACGCCATCGTCCACCACCTTCGC 342 37 100.0 36 ..................................... AACGCCGCTTTCGGTCGAGACGTGGCCGCCGCCAAC 269 37 100.0 36 ..................................... CGGGGATCAGTTCCTCAATGTCGGACTTCAAACGGC 196 37 100.0 36 ..................................... AACTCGTCAACCGGGCTCACCCTGCGCGGTCAATGG 123 37 83.8 0 ............................GG.C.TGT. | ========== ====== ====== ====== ===================================== ========================================= ================== 35 37 99.5 37 GTCTTCCTGGGTGGAAACGCCCAGGCCTCATTGAAGC # Left flank : GTGACTTACGACATCGGCGACCCGAAACGGGGGCGGCGGGTATTCAAGGCGATGGAGGGGTATGGCCGCTGGCTTCAGCTTTCGGTTTTCCAATGCCGCCTGACCCCGCGCCGCCGGGCGGCCTTGGGCGCCCGGCTGGACGGTCTGATCAAGCCGTCGGAGGATCATGTCCTGATCATGGACATCGGTCCGGCCGAAACAGTGGATTTGCGAATAGAGAGCCTTGGCCGTCCATTCGACACGATCCGGCGCGAGGCGATCGTGGTGTGAGCGTGGCGTGTGATGCTATCGTGGAAGCCTGCCGGCCCTTTTGCGAGGGGTTCGGCGCACATGAAAATGCTGGCACCGCTCGAATTTGCCAAGTGGTTGTCGGCGCTCGGTTCTTTGACATCGTGAAGAACGAATGCGGATCGAAAACCGCCCTGCCCATCCTCGAAGTGAGAAACCCTTCGAAATCGGCGCCATTTCTGGCTATTAAACTAGCGGCTAGAGTGGTGGCG # Right flank : CCCGAGGCGTGGTGTAGGAGCCGGGGGGCTCATCTGGTCTCCGGCAGGCCTAGCCGGGGCAGTCACGCAGCCGTAGCGGGCAACGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCTGGGTGGAAACGCCCAGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-15.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //