Array 1 108328-107811 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKYK01000002.1 Escherichia coli strain 1rc4 contig002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108327 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 108266 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 108205 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 108144 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 108083 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 108022 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 107961 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 107900 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 107839 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 124956-123829 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKYK01000002.1 Escherichia coli strain 1rc4 contig002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 124955 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 124894 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 124833 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 124772 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 124711 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 124650 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 124589 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 124528 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 124467 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 124406 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 124345 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 124284 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 124223 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 124162 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 124101 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 124040 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 123979 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 123918 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 123857 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //